https://github.com/luizirber/2017-illo-snakemake
https://github.com/luizirber/2017-illo-snakemake
Last synced: 4 months ago
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- Host: GitHub
- URL: https://github.com/luizirber/2017-illo-snakemake
- Owner: luizirber
- Created: 2017-06-09T16:04:47.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2017-06-09T18:54:06.000Z (over 8 years ago)
- Last Synced: 2025-06-29T11:53:09.007Z (4 months ago)
- Language: Python
- Size: 1.95 KB
- Stars: 0
- Watchers: 2
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# 2017 Snakemake ILLO
- June 9th, 2017
- Video: https://www.youtube.com/watch?v=yo4h4IBJccY
- (Previously: [doit ILLO](https://www.youtube.com/watch?v=TMxUmuKtqNI))
## Installation
We'll use conda to manage our installation today.
```
curl -O https://repo.continuum.io/miniconda/Miniconda3-4.3.21-Linux-x86_64.sh
# curl -O https://repo.continuum.io/miniconda/Miniconda3-4.2.11-MacOSX-x86_64.sh
bash Miniconda3-4.3.21-Linux-x86_64.sh
export PATH="${HOME}/miniconda/bin:$PATH"
conda create -n illo python=3.6.1
source activate illo
conda config --add channels conda-forge
conda config --add channels defaults
conda config --add channels r
conda config --add channels bioconda
conda install khmer snakemake bwa samtools bcftools trimmomatic
```