https://github.com/m-osky/handle_edit_files

Miscelaneous scripts used to handle files, columns, rename, etc
https://github.com/m-osky/handle_edit_files

bash-script perl-script shell-script

Last synced: about 2 months ago
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Miscelaneous scripts used to handle files, columns, rename, etc

• Host: GitHub
• URL: https://github.com/m-osky/handle_edit_files
• Owner: M-Osky
• Created: 2019-01-15T14:36:49.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2021-10-08T11:58:24.000Z (about 3 years ago)
• Last Synced: 2024-10-13T11:43:08.851Z (3 months ago)
• Topics: bash-script, perl-script, shell-script
• Language: Perl
• Homepage:
• Size: 30.3 KB
• Stars: 0
• Watchers: 0
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Handle and Edit Files

Miscelaneous scripts used to handle files, columns, rename, etc

Most of them are quite old and can be done with a one liner in perl, or by using 'awk' or 'sed', but may be useful for someone else.

The more simple have a few lines explaining at the beginning of the script, other have --help information

The only ones I still use in order to no have to come up with a oneliner in Perl or similar are:

- fixnumeration: If you have problem sorting samples because A2 is sorted after A19, this will add zeroes to the left (A02)

- popmap_maker: if your file names include the sample and population code it will make a popmap for you - file with a column with sample IDs and another of population codes.

  Lots of softwares (Stacks, FastStructure..) will ask for a popmap file with this format

- rename_files: Use this script to rename a bunch of files (pictures) according to the directory name, check the help information (--h; -help; etc...) for more details.

- row_multiplier: use this to duplicate as many times as needed the rows of a file, check its help information if needed

- transpose: Will transpose any file in the folder. It's based in a script written by [Frederic PONT](https://sites.google.com/site/fredsoftwares/products/transpose-table)

- extract_columns: this can be done with cut or similar commands, but may be helpful for someone starting. Use --help to check the options.