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https://github.com/maastrichtu-ids/fairsharing-metrics

📊 Fairsharing metrics implementation
https://github.com/maastrichtu-ids/fairsharing-metrics

bioinformatics data-quality docker python rdf rdfunit

Last synced: 15 days ago
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📊 Fairsharing metrics implementation

Host: GitHub
URL: https://github.com/maastrichtu-ids/fairsharing-metrics
Owner: MaastrichtU-IDS
License: mit
Created: 2017-12-12T15:28:07.000Z (about 7 years ago)
Default Branch: master
Last Pushed: 2020-12-15T18:55:03.000Z (about 4 years ago)
Last Synced: 2024-04-18T06:14:51.278Z (9 months ago)
Topics: bioinformatics, data-quality, docker, python, rdf, rdfunit
Language: Jupyter Notebook
Homepage:
Size: 75.2 KB
Stars: 2
Watchers: 2
Forks: 3
Open Issues: 2
Metadata Files:
- Readme: README.md
- License: LICENSE

Awesome Lists containing this project

README

        # Fairsharing Metrics

[![License](https://img.shields.io/badge/FAIR-metrics-orange.svg)](http://fairmetrics.org/)

[![License](https://img.shields.io/badge/license-MIT-blue.svg)](https://opensource.org/licenses/MIT)

A Dockerization of the Fairsharing metrics as a module for Data Quality Analysis.

The purpose of this project is to provide automation as a stand-alone implementation in order to escalate on more general data quality assessment.

## Prerequisites

- Installing [Docker](https://docs.docker.com/) for [Mac](https://docs.docker.com/docker-for-mac/install/) and [Windows](https://docs.docker.com/docker-for-windows/install/download-docker-for-windows)

![docker](img/docker.png)

## Usage

### Clone the repository

        git clone https://github.com/pedrohserrano/fairsharing-metrics.git && \

        cd fairsharing-metrics

### Build the Docker image

```shell

docker build -t fairsharing-metrics .

```

### Run the Docker container to get the FAIRmetrics

```shell

docker run -it --rm \

    -v :/data/ \

    fairsharing-metrics 

    

docker run -it --rm \

    -v /data/fairmetrics:/data/ \

    fairsharing-metrics https://fairsharing.org/biodbcore-000015

urls = ['https://fairsharing.org/biodbcore-000015',

        'https://fairsharing.org/biodbcore-000304',

        'https://fairsharing.org/biodbcore-000456',

        'https://fairsharing.org/bsg-s000909']

```

## Licence

The MIT License (MIT) 2017

## Acknowledgments

- [RDFUnit](http://aksw.org/Projects/RDFUnit.html)

- [FAIRsharing.org](http://FAIRsharing.org)