https://github.com/maastrichtu-ids/semanticscience

The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.
https://github.com/maastrichtu-ids/semanticscience

ontology owl science-fair

Last synced: 12 days ago
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The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.

• Host: GitHub
• URL: https://github.com/maastrichtu-ids/semanticscience
• Owner: MaastrichtU-IDS
• Created: 2015-03-19T02:50:47.000Z (almost 10 years ago)
• Default Branch: master
• Last Pushed: 2024-04-10T07:40:21.000Z (9 months ago)
• Last Synced: 2024-04-18T06:14:53.844Z (9 months ago)
• Topics: ontology, owl, science-fair
• Language: HTML
• Homepage: https://sio.semanticscience.org
• Size: 232 MB
• Stars: 60
• Watchers: 8
• Forks: 11
• Open Issues: 2
• Metadata Files:
  • Readme: README.md

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README

        
# semanticscience

The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes. Have a look at a brief [overview of SIO](https://github.com/micheldumontier/semanticscience/wiki/SIO-Overview), its [design principles](https://github.com/micheldumontier/semanticscience/wiki/Ontology-Design-Principles) and [design patterns](https://github.com/micheldumontier/semanticscience/wiki/Design-Patterns), and the published [paper on SIO](http://www.jbiomedsem.com/content/5/1/14).  

The OWL2 ontology is available at http://semanticscience.org/ontology/sio.owl 

Subsets of SIO have been prepared for modular import. 

* [labels as SIO URIs](https://github.com/micheldumontier/semanticscience/tree/master/ontology/sio/release/sio-subset-labels.owl)

* [other subsets including core, chemical, nlm, etc](https://github.com/micheldumontier/semanticscience/tree/master/ontology/sio/release/)

view the ontology at 

* [sio@bioportal](http://bioportal.bioontology.org/ontologies/SIO)

* [sio@ontobee](https://ontobee.org/ontology/SIO) 

* [sio@aberowl](http://aber-owl.net/ontology/SIO)

Resolution of SIO identifiers is currently being done with Ontobee. 

* [protein: http://semanticscience.org/resource/SIO_010043](http://semanticscience.org/resource/SIO_010043)

* [dataset: http://semanticscience.org/resource/SIO_000089](http://semanticscience.org/resource/SIO_000089)

* [data analysis: http://semanticscience.org/resource/SIO_001051](http://semanticscience.org/resource/SIO_001051)

Resources that use this ontology include:

* [Bio2RDF](http://bio2rdf.org/) Linked Data for the Life Sciences 

* [SADI Semantic Web Services](http://sadiframework.org). 

* [DisGeNET](http://rdf.imim.es/DisGeNET.html)'s gene-disease associations 

* The NCBI's [PubChem RDF](http://pubchem.ncbi.nlm.nih.gov/rdf/) for measurement values 

* The EBI's [Gene Expression Atlas](http://www.ebi.ac.uk/rdf/documentation/atlas) 

* The [Graph4Code](https://wala.github.io/graph4code/) project

* The [The Integrated Database of Small Molecules (IDSM)](https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btae174/7638802)

If you have questions please send to SIO mailing list ([email protected]; http://groups.google.com/group/sio-ontology). If you have term requests, just use the [issue tracker](https://github.com/micheldumontier/semanticscience/issues).