https://github.com/maayanlab/geode
A Python implementation of the R package GeoDE
https://github.com/maayanlab/geode
Last synced: 5 months ago
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A Python implementation of the R package GeoDE
- Host: GitHub
- URL: https://github.com/maayanlab/geode
- Owner: MaayanLab
- License: gpl-2.0
- Created: 2014-08-28T20:19:03.000Z (over 10 years ago)
- Default Branch: master
- Last Pushed: 2023-07-06T21:44:55.000Z (almost 2 years ago)
- Last Synced: 2023-10-20T21:24:14.270Z (over 1 year ago)
- Language: Python
- Size: 230 KB
- Stars: 7
- Watchers: 3
- Forks: 4
- Open Issues: 2
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
GeoDEpy
=======
A Python implementation of the R package GeoDE (http://cran.r-project.org/web/packages/GeoDE/index.html)
Installation
----
```
$ pip install git+https://github.com/Maayanlab/geode.git
```
Introduction
----
A geometrical Approach to Differential expression and gene-set enrichment.
Given expression data this package calculate a multivariate geometrical characterization of the differential expression and can also perform gene-set enrichment.
Dependency
----
These functions is dependent on Numpy(http://www.numpy.org/) and Scikit-learn(http://scikit-learn.org/stable/)
References
----
http://www.biomedcentral.com/1471-2105/15/79