https://github.com/maayanlab/harmonizome-data-processing-appyters

Converting Harmonizome Python scripts into Appyters
https://github.com/maayanlab/harmonizome-data-processing-appyters
Last synced: about 1 month ago
JSON representation
Converting Harmonizome Python scripts into Appyters
Host: GitHub
URL: https://github.com/maayanlab/harmonizome-data-processing-appyters
Owner: MaayanLab
License: mit
Created: 2020-06-01T22:16:51.000Z (almost 5 years ago)
Default Branch: master
Last Pushed: 2020-07-08T05:06:37.000Z (almost 5 years ago)
Last Synced: 2025-01-22T03:15:57.358Z (3 months ago)
Language: Jupyter Notebook
Size: 71.6 MB
Stars: 1
Watchers: 4
Forks: 0
Open Issues: 0
Metadata Files:
- Readme: README.md
- License: LICENSE
- Roadmap: Roadmap Epigenomics.ipynb
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README

        # HarmonizomePythonScripts

#### All processed data can be accesed via: [ Porcessed Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE)    

#### The file containing all utility functions required to run the scripts can be found here: [ Utility Functions File ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/utility_functions.py)  

#### The file containing the gene symbol mapping (mapping all gene symbols to up to date human symbols) required to run the scirpt cna be found here: [ Gene Symbol Mapping File ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/mappingFile_2017.txt)  

#### The file containing the gene ID to symbol mapping (mapping all Entrez Gene IDs to gene symbols) required to run the scirpt cna be found here: [ Gene ID to Symbol Mapping File ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GeneSymbolAndIDS_2017.txt)  

Number of Resources: 41

Number of Datasets: 116  




| Resource | Data Set | Number Of Genes | Number Of Attributes | Number Of Statistically Significant Associations | Prossecing Script | Processed Data |

|-|-|-|-|----|-|-|

| [ARCHS4](https://amp.pharm.mssm.edu/archs4/) | Human Cell Line | 23956 | 127 | 608457 | [ ARCHS4 HCL Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ARCHS4/Human%20Cell%20Lines/ARCHS4%20(Human%20Cell%20Lines).ipynb) | [ ARCHS4 HCL Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FARCHS4%2FHuman%20Cell%20Line) |

| [ARCHS4](https://amp.pharm.mssm.edu/archs4/) | Human Tissue | 23169 | 108 | 500364 | [ ARCHS4 HT Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ARCHS4/Human%20Tissue/ARCHS4%20(Human%20Tissue).ipynb) | [ ARCHS4 HT Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FARCHS4%2FHuman%20Tissue) |

| [ARCHS4](https://amp.pharm.mssm.edu/archs4/) | Human Kinase | 17201 | 498 | 140739 | [ ARCHS4 HK Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ARCHS4/Human%20Kinase/ARCHS4%20(Kinases).ipynb) | [ ARCHS4 HK Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FARCHS4%2FHuman%20Kinase) |

| [ARCHS4](https://amp.pharm.mssm.edu/archs4/) | Human Transcription Factors | 21917 | 1724 | 470861 | [ ARCHS4 HTF Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ARCHS4/Human%20Trasncription%20Factors/ARCHS4%20(Transcription%20Factors).ipynb) | [ ARCHS4 HTF Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FARCHS4%2FHuman%20Transcription%20Factors) |

| [ARCHS4](https://amp.pharm.mssm.edu/archs4/) | IDG Focused Genes | 18020 | 352 | 95958 | [ ARCHS4 IDG Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ARCHS4/Human%20IDG%20Focused%20Genes/ARCHS4%20(IDG).ipynb) | [ ARCHS4 IDG Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FARCHS4%2FHuman%20IDG%20Focused%20Genes) |

| [Achilles](https://portals.broadinstitute.org/achilles) | Achilles | 12279 | 216 | 2652264 | [ Achilles Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Achilles/Achilles.ipynb) | [ Achilles Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FAchilles) |

| [Allen Brain Atlas](https://www.brain-map.org/) | Adult Human Brain (RNA-Sequencing) | 18629 | 100 | 92925 | [ ABA-AHB-RS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Adult%20Human%20Brain%20(RNA-Sequencing)/Allen%20Brain%20Atlas%20Adult%20Human%20Brain%20(RNA-Sequencing).ipynb)| [ ABA-AHB-RS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FAllen%20Brain%20Atlas%2FAllen%20Brain%20Atlas%20Adult%20Human%20Brain%20(RNA-Sequencing)) |

| [Allen Brain Atlas](https://www.brain-map.org/) | Adult Human Brain (microarray) | 18822 | 414 | 377048 | [ ABA-AHB-MA Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Adult%20Human%20Brain%20(microarray)/Allen%20Brain%20Atlas%20Adult%20Human%20Brain%20(microarray).ipynb)| [ ABA-AHB-MA Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FAllen%20Brain%20Atlas%2FAllen%20Brain%20Atlas%20Adult%20Human%20Brain%20(microarray)) |

| [Allen Brain Atlas](https://www.brain-map.org/) | Aging Human Brain (RNA-Sequencing) Dementia TBI - Tissue | 27858 | 32 | 55716 | [ ABA-AB-D-TBI Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Aging%20Human%20Brain%20(RNA-Sequencing)/Dementia%20TBI%20-%20Tissue/Allen%20Brain%20Atlas%20Aging%20Human%20Brain%20Tissue-Demetia-TBI%20(RNA-Seq).ipynb)| [ ABA-AB-D-TBI Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FAllen%20Brain%20Atlas%2FAllen%20Brain%20Atlas%20Aging%20Brain%20(RNA-Sequencing)%2FTissue-Demetia-TBI) |

| [Allen Brain Atlas](https://www.brain-map.org/) | Aging Human Brain (RNA-Sequencing) No Disease| 28206 | 40 | 56388 | [ ABA-AB-NS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Aging%20Human%20Brain%20(RNA-Sequencing)/No%20Disease%20-%20Tissue%20Age/Allen%20Brain%20Atlas%20Aging%20Human%20Brain%20No%20Disease%20-%20Tissue%20Age%20(RNA-Seq).ipynb)| [ ABA-AB-NS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FAllen%20Brain%20Atlas%2FAllen%20Brain%20Atlas%20Aging%20Brain%20(RNA-Sequencing)%2FNormal-Tissue-Age) |

| [Allen Brain Atlas](https://www.brain-map.org/) | Developing Human Brain (RNA-Sequencing) Age | 22411 | 31 | 44822 | [ ABA-DB-RS-A Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Developing%20Human%20Brain%20(RNA-Sequencing)/Age/Allen%20Brain%20Atlas%20Developing%20Human%20Brain%20Age%20(RNA-Seq).ipynb)| [ ABA-DB-RS-A Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FAllen%20Brain%20Atlas%2FDeveloping%20Human%20Brain%20(RNA-Sequencing)%2FAge) |

| [Allen Brain Atlas](https://www.brain-map.org/) | Developing Human Brain (RNA-Sequencing) Sample | 22411 | 524 | 587286 | [ ABA-DB-RS-S Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Developing%20Human%20Brain%20(RNA-Sequencing)/Sample/Allen%20Brain%20Atlas%20Developing%20Human%20Brain%20Sample%20(RNA-Seq).ipynb)| [ ABA-DB-RS-S Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FAllen%20Brain%20Atlas%2FDeveloping%20Human%20Brain%20(RNA-Sequencing)%2FSample) |

| [Allen Brain Atlas](https://www.brain-map.org/) | Developing Human Brain (RNA-Sequencing) Tissue | 22411 | 26 | 44822 | [ ABA-DB-RS-T Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Developing%20Human%20Brain%20(RNA-Sequencing)/Tissue/Allen%20Brain%20Atlas%20Developing%20Human%20Brain%20Tissue%20(RNA-Seq).ipynb)| [ ABA-DB-RS-T Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FAllen%20Brain%20Atlas%2FDeveloping%20Human%20Brain%20(RNA-Sequencing)%2FTissue) |

| [Allen Brain Atlas](https://www.brain-map.org/) | Developing Human Brain (microarray) Age | 16827 | 27 | 27015 | [ ABA-DB-MA-A Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Developing%20Human%20Brain%20(microarray)/Age/Allen%20Brain%20Atlas%20Developing%20Human%20Brain%20Age%20(microarray).ipynb)| [ ABA-DB-MA-A Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FAllen%20Brain%20Atlas%2FAllen%20Brain%20Atlas%20Developing%20Human%20Brain%20(microarray)%2FAge) |

| [Allen Brain Atlas](https://www.brain-map.org/) | Developing Human Brain (microarray) Sample | 16827 | 492 | 413974 | [ ABA-DB-MA-S Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Developing%20Human%20Brain%20(microarray)/Sample/Allen%20Brain%20Atlas%20Developing%20Human%20Brain%20Sample%20(microarray).ipynb)| [ ABA-DB-MA-S Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FAllen%20Brain%20Atlas%2FAllen%20Brain%20Atlas%20Developing%20Human%20Brain%20(microarray)%2FSample) |

| [Allen Brain Atlas](https://www.brain-map.org/) | Developing Human Brain (microarray) Tissue | 16827 | 26 | 33653 | [ ABA-DB-MA-T Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Developing%20Human%20Brain%20(microarray)/Tissue/Allen%20Brain%20Atlas%20Developing%20Human%20Brain%20Tissue%20(microarray).ipynb)| [ ABA-DB-MA-T Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FAllen%20Brain%20Atlas%2FAllen%20Brain%20Atlas%20Developing%20Human%20Brain%20(microarray)%2FTissue) |

| [Allen Brain Atlas](https://www.brain-map.org/) | Prenatal Human Brain (microarray) Sample | 19281 | 1198 | 1156878 | [ ABA-P-S Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Prenatal%20Human%20Brain%20(microarray)/Sample/Allen%20Brain%20Atlas%20Prenatal%20Human%20Brain%20Sample%20(RNA-Seq).ipynb)| [ ABA-P-S Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FAllen%20Brain%20Atlas%2FPrenatal%20Human%20Brain%20(microarray)%2FSample) |

| [Allen Brain Atlas](https://www.brain-map.org/) | Prenatal Human Brain (microarray) Tissue | 19281 | 516 | 501308 | [ ABA-P-T Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Allen%20Brain%20Atlas/Prenatal%20Human%20Brain%20(microarray)/Tissue/Allen%20Brain%20Atlas%20Prenatal%20Human%20Brain%20Tissue%20(RNA-Seq).ipynb)| [ ABA-P-T Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FAllen%20Brain%20Atlas%2FPrenatal%20Human%20Brain%20(microarray)%2FTissue) |

| [BioGPS](http://biogps.org/#goto=welcome) | Cell Line | 12296 | 93 | 228687 | [ BGPS-CL Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/BioGPS/BioGPS%20(Human%20Cell%20Line).ipynb)| [ BGPS-CL Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FBioGPS%2FCell%20Line) |

| [BioGPS](http://biogps.org/#goto=welcome) | Tissue | 16290 | 84 | 274099 | [ BGPS-T Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/BioGPS/BioGPS%20(Human%20Tissue%20and%20Cell%20Type).ipynb)| [ BGPS-T Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FBioGPS%2FTissue) |

| [BioPlanet](https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_1054&target=pathway#) | ABCA transporters in lipid homeostasis | 9819 | | | [BioPlanet Scripts](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/BioPlanet/BioPlanet.ipynb) | [BioPlanet Data](https://amp.pharm.mssm.edu/lincs-playground/index.php/s/Xdv5qd9Tba9arlV) |

| [BioPlex](http://bioplex.hms.harvard.edu/) | BioPlex | 10824 | 10824 | 111694 | [ BPLX Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/BioPlex/BioPlex.ipynb)| [ BPLX Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FBioPlex) |

| [bgee](https://bgee.org/) | Human Sample | 34668 | 1077 | 14983142 | [ BHS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Human/bgee%20Human%20Sample.ipynb)| [ BHS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2Fbgee%2FHuman%2FSample) |

| [bgee](https://bgee.org/) | Human Developmental Stage | 34668 | 33 | 603839 | [ BHDS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Human/bgee%20Human%20Developmental%20Stage.ipynb)| [ BHDS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2Fbgee%2FHuman%2FDevelopmental%20Stage) |

| [bgee](https://bgee.org/) | Human Anatomical Entity | 34668 | 308 | 4308050 | [ BHAE Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Human/bgee%20Human%20Anatomical%20Entity.ipynb)| [ BHAE Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2Fbgee%2FHuman%2FAnatomical%20Entity) |

| [bgee](https://bgee.org/) | Mouse Sample | 16289 | 10797 | 9141706 | [ BMS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Mouse/bgee%20Mouse%20Sample.ipynb)| [ BMS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2Fbgee%2FMouse%2FSample) |

| [bgee](https://bgee.org/) | Mouse Developmental Stage | 16289 | 58 | 660778 | [ BMDS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Mouse/bgee%20Mouse%20Developmental%20Stage.ipynb)| [ BMDS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2Fbgee%2FMouse%2FDevelopmental%20Stage) |

| [bgee](https://bgee.org/) | Mouse Anatomical Entity | 16289 | 3142 | 3163055 | [ BMAE Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Mouse/bgee%20Mouse%20Anatomical%20Entity.ipynb)| [ BMAE Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2Fbgee%2FMouse%2FAnatomical%20Entity) |

| [bgee](https://bgee.org/) | Rat Sample | 15799 | 11 | 139136 | [ BRS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Rat/bgee%20Rat%20Sample.ipynb)| [ BRS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2Fbgee%2FRat%2FSample) |

| [bgee](https://bgee.org/) | Rat Developmental Stage | 15799 | 2 | 22100 | [ BRDS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Rat/bgee%20Rat%20Developmental%20Stage.ipynb)| [ BRDS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2Fbgee%2FRat%2FDevelopmental%20Stage) |

| [bgee](https://bgee.org/) | Rat Anatomical Entity | 15799 | 10 | 132835 | [ BRAE Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/bgee/Rat/bgee%20Rat%20Anatomical%20Entity.ipynb)| [ BRAE Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2Fbgee%2FRat%2FAnatomical%20Entity) |

|[CCLE](https://portals.broadinstitute.org/ccle) | Cell Line | 17337 | 1036 | 898462 | [ CCLE Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/CCLE) | [CCLE Data](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FCCLE) |

| [Chip Atlas](http://chip-atlas.org/) | Chip Atlas | 18539 | 963 | 1361218 | [ CHPATLS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Chip%20Atlas/Chip_Atlas.ipynb) | [ CHPATLS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FChip%20Atlas) |

| [ClinVar](https://www.ncbi.nlm.nih.gov/clinvar/) | ClinVar | 1952 | 2934 | 6663 | [ ClinVar Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ClinVar/ClinVar.ipynb) | [ ClinVar Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FClinVar) |

| [CMAP](https://portals.broadinstitute.org/cmap/) | CMAP | 11801 | 200 | 142745 | [ CMAP Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/cmap/cmap.ipynb) | [ CMAP Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FCMAP) |

| [CORUM](http://mips.helmholtz-muenchen.de/corum/#) | CORUM | 3753 | 2752 | 11280 | [ CORUM Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/CORUM/CORUM.ipynb) | [ CORUM Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FCORUM) |

| [CTD](http://ctdbase.org/) | Gene Chemical Interactions | 15676 | 10366 | 160332 | [ CTD-GCI Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/CTD/Gene%20Chemical%20Interactions/CTD%20(Gene%20Chemical%20Interactions).ipynb) | [ CTD-GCI Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FCTD%2FGene%20Chemical%20Interactions) |

| [CTD](http://ctdbase.org/) | Gene Disease Interactions | 17487 | 6384 | 22325153 | [ CTD-GDI Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/CTD/Gene%20Disease%20Interactions/CTD%20(Gene%20Disease%20Interactions).ipynb) | [ CTD-GDI Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FCTD%2FGene%20Disease%20Interactions) |

| [dbGAP](https://www.ncbi.nlm.nih.gov/gap) | dbGAP | 3616 | 591 | 6088 | [ dbGAP Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/dbGAP/dbGAP.ipynb) | [ dbGAP Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FdbGAP) |

| [Drugbank](https://www.drugbank.ca/) | Drug Carrier | 61 | 270 | 352 | [ DRGBNK-DC Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Drugbank/Drugbank-Drug%20Carrier.ipynb) | [ DRGBNK-DC Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FDrugbank%2FDrug%20Carrier) |

| [Drugbank](https://www.drugbank.ca/) | Drug Enzyme | 261 | 869 | 2429 | [ DRGBNK-DE Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Drugbank/Drugbank-Drug%20Enzyme.ipynb) | [ DRGBNK-DE Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FDrugbank%2FDrug%20Enzyme) |

| [Drugbank](https://www.drugbank.ca/) | Drug Target | 2532 | 5108 | 13355 | [ DRGBNK-DT Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Drugbank/Drugbank-Drug%20Target.ipynb) | [ DRGBNK-DT Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FDrugbank%2FDrug%20Target) |

| [Drugbank](https://www.drugbank.ca/) | Drug Transporter | 154 | 609 | 1784 | [ DRGBNK-DTRS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Drugbank/Drugbank-Drug%20Transporter.ipynb) | [ DRGBNK-DTRS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FDrugbank%2FDrug%20Transporter) |

| [DSigDB](http://tanlab.ucdenver.edu/DSigDB/DSigDBv1.0/) | Computational Drug Signatures | 18215 | 15819 | 293199 | [ DSigDB-CDS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DSigDB/DSigDB%20Computational%20Drug%20Signatures.ipynb) | [ DSigDB-CDS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FDSigDB%2FComputational%20Drug%20Signatures) |

| [DSigDB](http://tanlab.ucdenver.edu/DSigDB/DSigDBv1.0/) | FDA Approved Drugs | 1279 | 1205 | 12571 | [ DSigDB-FAD Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DSigDB/DSigDB%20FDA%20Approved%20Drugs.ipynb) | [ DSigDB-FAD Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FDSigDB%2FFDA%20Approved%20Drugs) |

| [DSigDB](http://tanlab.ucdenver.edu/DSigDB/DSigDBv1.0/) | Kinase Inhibitors | 404 | 1150 | 16240 | [ DSigDB-KI Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DSigDB/DSigDB%20Kinase%20Inhibitors.ipynb) | [ DSigDB-KI Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FDSigDB%2FKinase%20Inhibitors) |

| [DSigDB](http://tanlab.ucdenver.edu/DSigDB/DSigDBv1.0/) | Perturbagen Signatures | 10933 | 1163 | 158860 | [ DSigDB-PS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/DSigDB/DSigDB%20Perturbagen%20Signatures.ipynb) | [ DSigDB-PS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FDSigDB%2FPerturbagen%20Signatures) |

| [ENCODE](https://www.encodeproject.org/) | Transcription Factors | 24656 | 456 | 1530489 | [ ENCODE-TF Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Encode/Transcription%20Factors/ENCODE%20(Transcription%20Factors).ipynb) | [ ENCODE-TF Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FENCODE%2FTranscription%20Factors) |

| [ENCODE](https://www.encodeproject.org/) | Transcription Factors - Binding Sites | 24656 | 1129 | 2220608 | [ ENCODE-TF-BS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/Encode/Transcription%20Factors%20-%20Binding%20Sites) | [ ENCODE-TF-BS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FENCODE%2FTranscription%20Factors%20-%20Binding%20Sites) |

| [ESCAPE](http://www.maayanlab.net/ESCAPE/) | ESCAPE | 13514 | 44 | 81427 | [ ESCAPE Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/ESCAPE/ESCAPE%20(gene%20target).ipynb) | [ ESCAPE Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FESCAPE) |

| [GAD](https://geneticassociationdb.nih.gov/) | Gene-Disease Associations | 14107 | 15522 | 109097 | [ GAD Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GAD/Gene-Disease%20Associations/GAD%20(Gene-Disease%20Associations).ipynb) | [ GAD Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FGAD%2FGene-Disease%20Associations) |

| [GAD](https://geneticassociationdb.nih.gov/) | High Level Gene-Disease Associations | 14120 | 19 | 42691 | [ HL-GAD Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GAD/High%20Level%20Gene-Disease%20Associations/GAD%20(High%20Level%20Gene-Disease%20Associations).ipynb) | [ HL-GAD Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FGAD%2FHigh%20Level%20Gene-Disease%20Associations) |

| [GDSC](https://www.cancerrxgene.org/) | Genomics of Drug Sensitivity in Cancer | 12296 | 727 | 1787693 | [ GDSC Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GDSC/GDSC.ipynb) | [ GDSC Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FGDSC%2FCell%20Line) |

| [GeneRIF](https://www.ncbi.nlm.nih.gov/gene/about-generif) | GeneRIF | 4368 | 125 | 9452 | [ GeneRIF Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GeneRIF/GeneRIF.ipynb) | [ GeneRIF Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FGeneRIF) |

| [GeneSigDB](https://www.genesigdb.org/) | GeneSigDB | 18534 | 3508 | 404516 | [ GeneSigDB Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GeneSigDB/GeneSigDB.ipynb) | [ GeneSigDB Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FGeneSigDB) |

| [GO](http://www.geneontology.org/) | Biological Process | 14481 | 11947 | 195513 | [ GO-BP Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GO/Gene%20Ontology%20(GO)%20Biological%20Process.ipynb) | [ GO-BP Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FGO%2FBiological%20Process) |

| [GO](http://www.geneontology.org/) | Cellular Component | 12400 | 962 | 43458 | [ GO-CC Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GO/Gene%20Ontology%20(GO)%20Cellular%20Component.ipynb) | [ GO-CC Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FGO%2FCellular%20Compunent) |

| [GO](http://www.geneontology.org/)  | Molecular Function | 11739 | 3618 | 48304 | [ GO-uf Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GO/Gene%20Ontology%20(GO)%20Molecular%20Function.ipynb) | [ GO-uf Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FGO%2FMolecular%20Function) |

| [GTEx](https://www.gtexportal.org/home/) | Sample | 25577 | 8555 | 10940561 | [ GTEx Sample Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GTEx/Sample) | [ GTEx Sample Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FGTEx%2FSample) |

| [GTEx](https://www.gtexportal.org/home/) | Tissue | 25577 | 53 | 64221 | [ GTEx Tissue Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/tree/master/GTEx/Tissue) | [ GTEx Tissue Data](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FGTEx%2FTissue) | 

| [Guide to Pharmacology](http://www.guidetopharmacology.org/) | Chemical Ligands of Receptors | 1577 | 7087 | 13759 | [ GTP-CLR Tissue Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Guide%20to%20Pharmacology/Chemical%20Ligands%20of%20Receptors/Guide%20to%20Pharmacology%20(Chemical%20Ligands%20of%20Receptors).ipynb) | [ GTP-CLR Tissue Data](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FGuide%20to%20Pharmacology%2FChemical%20Ligands%20of%20Receptors) | 

| [Guide to Pharmacology](http://www.guidetopharmacology.org/)| Protein Ligands of Receptors | 224 | 196 | 427 | [ GTP-PLR Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Guide%20to%20Pharmacology/Protein%20Ligands%20of%20Receptors/Guide%20to%20Pharmacology%20(Protein%20Ligands%20of%20Receptors).ipynb) | [ GTP-PLR Data](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FGuide%20to%20Pharmacology%2FProtein%20Ligands%20of%20Receptors) | 

| [GWAS Catalog](https://www.ebi.ac.uk/gwas/) | GWAS Catalog | 6990 | 1978 | 18773 | [ GWAS Catalog Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GWAS%20Catalog/GWAS%20Catalog.ipynb) | [ GWAS Catalog Data](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FGWAS%20Catalog) | 

| [GWASdb](http://jjwanglab.org/gwasdb) | Disease | 12091 | 225 | 60246 | [ GWASdb Disease Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GWASdb/Disease/GWASdb-Disease.ipynb) | [ GWASdb Disease Data](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FGWASdb%2FDisease) | 

| [GWASdb](http://jjwanglab.org/gwasdb) | Phenotype | 12652 | 487 | 70482 | [ GWASdb Phenotype Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/GWASdb/Phenotype/GWASdb-Phenotype.ipynb) | [ GWASdb Phenotype Data](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FGWASdb%2FPhenotype) | 

| [hu.MAP](http://proteincomplexes.org/) | hu.MAP | 7669 | 7669 | 126176 | [ hu.MAP Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/hu.MAP/hu.MAP.ipynb) | [ hu.MAP Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2Fhu.MAP) | 

| [HPO](https://hpo.jax.org/) | Human Phenotype Ontology | 3644 | 7841 | 415410 | [ HPO Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Human%20Phenotype%20Ontology/Human%20Phenotype%20Ontology.ipynb) | [ HPO Data](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FHuman%20Phenotype%20Ontology) | 

| [Jensen Lab](https://jensenlab.org/) | Compartments | 18535 | 2826 | 829693 | [ JL-C Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Jensen/Compartments/JENSEN%20LAB%20(COMPARTMENTS).ipynb) | [ JL-C  Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FJensen%20Lab%2FCompartment) | 

| [Jensen Lab](https://jensenlab.org/) | Disease | 13149 | 3679 | 52079 | [ JL-D Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Jensen/Disease/JENSEN%20LAB%20(DISEASE).ipynb) | [ JL-D  Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FJensen%20Lab%2FDisease) | 

| [Jensen Lab](https://jensenlab.org/) | Tissues | 18565 | 4098 | 434311 | [ JL-T Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Jensen/Tissues/JENSEN%20LAB%20(TISSUE).ipynb) | [ JL-T  Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FJensen%20Lab%2FTissue) | 

| [MGI](http://www.informatics.jax.org/function.shtml) | Mouse Gene Ontology  | 7758 | 8639 | 134408 | [ MGI Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/MGI/Mouse%20Gene%20Ontology%20(MGI).ipynb) | [ MGI Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FMGI) | 

| [miRTarBase](http://mirtarbase.mbc.nctu.edu.tw/php/index.php) | miRTarBase  | 15575 | 3551 | 417884 | [ miRTarBase Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/miRTarBase/miRTarBase.ipynb) | [ miRTarBase Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FmiRTarBase) | 

| [Pathway Commons](https://www.pathwaycommons.org/) | Protein-Protein Interactions  | 16291 | 18511 | 1125042 | [ PCPPI Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Pathway%20Commons/Pathway%20Commons%20Protein-Protein%20Interactions.ipynb) | [ PCPPI Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FPathway%20Commons%2FProtein-Protein%20Interactions) | 

| [Pathway Commons](https://www.pathwaycommons.org/) | Pathways | 11164 | 51319 | 1257932 | [ PCP Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Pathway%20Commons/Pathway%20Commons%20Pathways.ipynb) | [ PCP Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FPathway%20Commons%2FPathways) | 

|[PheWeb](http://pheweb.sph.umich.edu/) | PheWeb | 2716 | | | [PheWeb Scripts](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/PheWeb/PheWeb.ipynb)| [PheWeb Data](https://amp.pharm.mssm.edu/lincs-playground/index.php/s/EJ4YrPDwx13E6SB) | [PHGKB](https://phgkb.cdc.gov/PHGKB/phgHome.action?action=home) | Public Health Genomics Knowledge Base  | 13221 | 2911 | 531075 | [ PHGKB Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Public%20Health%20Genomics%20Knowledge%20Base%20(PHGKB)/PHGKB.ipynb) | [ PHGKB Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FPublic%20Health%20Genomics%20Knowledge%20Base%20(PHGKB)) | 

| [Reactome](https://reactome.org/) | Reactome  | 10237 | 1887 | 105556 | [ Reactome Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Reactome/Reactome.ipynb) | [ Reactome Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FReactome) | 

| [Roadmap Epigenomics](http://www.roadmapepigenomics.org/) | Cell and Tissue Expression  | 18375 | 57 | 209475 | [ Roadmap Epigenomics Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Roadmap%20Epigenomics/Cell%20and%20Tissue%20Gene%20Expression%20Profiles/Roadmap%20Epigenomics%20(Cell%20and%20Tissue%20Expression).ipynb) | [ Roadmap Epigenomics Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FRoadmap%20Epigenomics) | 

| [TargetScanHuman](http://www.targetscan.org/vert_72/) | TargetScanHuman  | 18028 | 2318 | 5898446 | [ TargetScanHuman Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/Roadmap%20Epigenomics/Cell%20and%20Tissue%20Gene%20Expression%20Profiles/Roadmap%20Epigenomics%20(Cell%20and%20Tissue%20Expression).ipynb) | [ TargetScanHuman Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTargetScanHuman) | 

| [TCGA](https://cancergenome.nih.gov/) | Adrenocortical Carcinoma  | 18423 | 79 | 72970 | [ TCGA-ACC Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Adrenocortical%20Carcinoma%20(ACC).ipynb) | [ TCGA-ACC Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FAdrenocortical%20Carcinoma%20(ACC)) | 

| [TCGA](https://cancergenome.nih.gov/) | Bladder Urothelial Carcinoma  | 18549 | 430 | 398197 | [ TCGA-BLCA Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Bladder%20Urothelial%20Carcinoma%20(BLCA).ipynb) | [ TCGA-BLCA Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FBladder%20Urothelial%20Carcinoma%20(BLCA)) |

| [TCGA](https://cancergenome.nih.gov/) | Brain Lower Grade Glioma  | 18480 | 530 | 489769 | [ TCGA-LGG Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Brain%20Lower%20Grade%20Glioma%20(LGG).ipynb) | [ TCGA-LGG Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FBrain%20Lower%20Grade%20Glioma%20(LGG)) |

| [TCGA](https://cancergenome.nih.gov/) | Breast Invasive Carcinoma  | 18511 | 1215 | 1124480 | [ TCGA-BRCA Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Breast%20Invasive%20Carcinoma%20(BRCA).ipynb) | [ TCGA-BRCA Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FBreast%20Invasive%20Carcinoma%20(BRCA)) |

| [TCGA](https://cancergenome.nih.gov/) | Cervical squamous cell carcinoma and endocervical adenocarcinoma  | 18478 | 309 | 284538 | [ TCGA-CESC Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Cervical%20Squamous%20Cell%20Carcinoma%20and%20Endocervical%20Adenocarcinoma%20(CESC).ipynb) | [ TCGA-CESC Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FCervical%20Squamous%20Cell%20Carcinoma%20and%20Endocervical%20Adenocarcinoma%20(CESC)) |

| [TCGA](https://cancergenome.nih.gov/) | Cholangiocarcinoma  | 18589 | 45 | 41743 | [ TCGA-CHOL Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Cholangiocarcinoma%20(CHOL).ipynb) | [ TCGA-CHOL Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FCholangiocarcinoma%20(CHOL)) |

| [TCGA](https://cancergenome.nih.gov/) | Colon Adenocarcinoma  | 18340 | 501 | 459393 | [ TCGA-COAD Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Colon%20Adenocarcinoma%20(COAD).ipynb) | [ TCGA-COAD Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FColon%20Adenocarcinoma%20(COAD)) |

| [TCGA](https://cancergenome.nih.gov/) | Esophageal Carcinoma  | 18875 | 198 | 186087 | [ TCGA-ESCA Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Esophageal%20Carcinoma%20(ESCA).ipynb) | [ TCGA-ESCA Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FEsophageal%20Carcinoma%20(ESCA)) |

| [TCGA](https://cancergenome.nih.gov/) | Glioblastoma Multiforme  | 18471 | 173 | 159910 | [ TCGA-GBM Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Glioblastoma%20Multiforme%20(GBM).ipynb) | [ TCGA-GBM Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FGlioblastoma%20Multiforme%20(GBM)) |

| [TCGA](https://cancergenome.nih.gov/) | Head and Neck Squamous Cell Carcinoma | 18648 | 566 | 527943 | [ TCGA-HNSC Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Head%20and%20Neck%20Squamous%20Cell%20Carcinoma%20(HNSC).ipynb) | [ TCGA-HNSC Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FHead%20and%20Neck%20Squamous%20Cell%20Carcinoma%20(HNSC)) |

| [TCGA](https://cancergenome.nih.gov/) | Kidney Chromophobe | 18540 | 91 | 84676 | [ TCGA-KICH Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Kidney%20Chromophobe%20(KICH).ipynb) | [ TCGA-KICH Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FKidney%20Chromophobe%20(KICH)) |

| [TCGA](https://cancergenome.nih.gov/) | Kidney Renal Clear Cell Carcinoma | 18665 | 606 | 565628 | [ TCGA-KIRC Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Kidney%20Renal%20Clear%20Cell%20Carcinoma%20(KIRC).ipynb) | [ TCGA-KIRC Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FKidney%20Renal%20Clear%20Cell%20Carcinoma%20(KIRC)) |

| [TCGA](https://cancergenome.nih.gov/) | Kidney Renal Papillary Cell Carcinoma | 18546 | 323 | 299781 | [ TCGA-KIRP Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Kidney%20Renal%20Papillary%20Cell%20Carcinoma%20(KIRP).ipynb) | [ TCGA-KIRP Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FKidney%20Renal%20Papillary%20Cell%20Carcinoma%20(KIRP)) |

| [TCGA](https://cancergenome.nih.gov/) | Liver Hepatocellular Carcinoma | 18339 | 423 | 387737 | [ TCGA-LIHC Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Liver%20Hepatocellular%20Carcinoma%20(LIHC).ipynb) | [ TCGA-LIHC Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FLiver%20Hepatocellular%20Carcinoma%20(LIHC)) |

| [TCGA](https://cancergenome.nih.gov/) | Lung Adenocarcinoma | 18508 | 577 | 533911 | [ TCGA-LUAD Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Lung%20Adenocarcinoma%20(LUAD).ipynb) | [ TCGA-LUAD Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FLung%20Adenocarcinoma%20(LUAD)) |

| [TCGA](https://cancergenome.nih.gov/) | Lung Squamous Cell Carcinoma | 18608 | 552 | 513287 | [ TCGA-LUSC Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Lung%20Squamous%20Cell%20Carcinoma%20(LUSC).ipynb) | [ TCGA-LUSC Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FLung%20Squamous%20Cell%20Carcinoma%20(LUSC)) |

| [TCGA](https://cancergenome.nih.gov/) | Lymphoid Neoplasm Diffuse Large B-cell Lymphoma | 18967 | 48 | 42973 | [ TCGA-DLBC Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Lymphoid%20Neoplasm%20Diffuse%20Large%20B-cell%20Lymphoma%20(DLBC).ipynb) | [ TCGA-DLBC Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FLymphoid%20Neoplasm%20Diffuse%20Large%20B-cell%20Lymphoma%20(DLBC)) |

| [TCGA](https://cancergenome.nih.gov/) | Mesothelioma | 18545 | 87 | 81072 | [ TCGA-MESO Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Mesothelioma%20(MESO).ipynb) | [ TCGA-MESO Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FMesothelioma%20(MESO)) |

| [TCGA](https://cancergenome.nih.gov/) | Ovarian Serous Cystadenocarcinoma  | 18621 | 429 | 399505 | [ TCGA-OV Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Ovarian%20Serous%20Cystadenocarcinoma%20(OV).ipynb) | [ TCGA-OV Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FOvarian%20Serous%20Cystadenocarcinoma%20(OV)) |

| [TCGA](https://cancergenome.nih.gov/) | Pancreatic Adenocarcinoma | 18493 | 183 | 169642 | [ TCGA-PAAD Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Pancreatic%20Adenocarcinoma%20(PAAD).ipynb) | [ TCGA-PAAD Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FPancreatic%20Adenocarcinoma%20(PAAD)) |

| [TCGA](https://cancergenome.nih.gov/) | Pheochromocytoma and Paraganglioma | 18370 | 187 | 172133 | [ TCGA-PCPG Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Pheochromocytoma%20and%20Paraganglioma%20(PCPG).ipynb) | [ TCGA-PCPG Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FPheochromocytoma%20and%20Paraganglioma%20(PCPG)) |

| [TCGA](https://cancergenome.nih.gov/) | Prostate Adenocarcinoma | 18528 | 550 | 509464 | [ TCGA-PRAD Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Prostate%20Adenocarcinoma%20(PRAD).ipynb) | [ TCGA-PRAD Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FProstate%20Adenocarcinoma%20(PRAD)) |

| [TCGA](https://cancergenome.nih.gov/) | Rectum Adenocarcinoma | 18335 | 177 | 162528 | [ TCGA-READ Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Rectum%20Adenocarcinoma%20(READ).ipynb) | [ TCGA-READ Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FRectum%20Adenocarcinoma%20(READ)) |

| [TCGA](https://cancergenome.nih.gov/) | Sarcoma | 18584 | 265 | 245886 | [ TCGA-SARC Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Sarcoma%20(SARC).ipynb) | [ TCGA-SARC Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FSarcoma%20(SARC)) |

| [TCGA](https://cancergenome.nih.gov/) | Skin Cutaneous Melanoma | 18612 | 473 | 439949 | [ TCGA-SKCM Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Skin%20Cutaneous%20Melanoma%20(SKCM).ipynb) | [ TCGA-SKCM Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FSkin%20Cutaneous%20Melanoma%20(SKCM)) |

| [TCGA](https://cancergenome.nih.gov/) | Stomach Adenocarcinoma | 18917 | 453 | 428467 | [ TCGA-STAD Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Stomach%20Adenocarcinoma%20(STAD).ipynb) | [ TCGA-STAD Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FStomach%20Adenocarcinoma%20(STAD)) |

| [TCGA](https://cancergenome.nih.gov/) | Testicular Germ Cell Tumors | 18742 | 156 | 145048 | [ TCGA-TGCT Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Testicular%20Germ%20Cell%20Tumors%20(TGCT).ipynb) | [ TCGA-TGCT Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FTesticular%20Germ%20Cell%20Tumors%20(TGCT)) |

| [TCGA](https://cancergenome.nih.gov/) | Thymoma | 18514 | 122 | 112695 | [ TCGA-THYM Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Thymoma%20(THYM).ipynb) | [ TCGA-THYM Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FThymoma%20(THYM)) |

| [TCGA](https://cancergenome.nih.gov/) | Thyroid Carcinoma | 18371 | 572 | 525419 | [ TCGA-THCA Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Thyroid%20Carcinoma%20(THCA).ipynb) | [ TCGA-THCA Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FThyroid%20Carcinoma%20(THCA)) |

| [TCGA](https://cancergenome.nih.gov/) | Uterine Carcinosarcoma | 18821 | 57 | 56384 | [ TCGA-UCS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Uterine%20Carcinosarcoma%20(UCS).ipynb) | [ TCGA-UCS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FUterine%20Carcinosarcoma%20(UCS)) |

| [TCGA](https://cancergenome.nih.gov/) | Uterine Corpus Endometrial Carcinoma  | 18689 | 581 | 542785 | [ TCGA-UCEC Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Uterine%20Corpus%20Endometrial%20Carcinoma%20(UCEC).ipynb) | [ TCGA-UCEC Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FUterine%20Corpus%20Endometrial%20Carcinoma%20(UCEC)) |

| [TCGA](https://cancergenome.nih.gov/) | Uveal Melanoma  | 18136 | 80 | 73121 | [ TCGA-UVM Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/TCGA/The%20Cancer%20Gene%20Atlas%20Cancer%20(TCGA)%20-%20Uveal%20Melanoma%20(UVM).ipynb) | [ TCGA-UVM Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FTCGA%2FUveal%20Melanoma%20(UVM)) |

| [The Human Metabolome Database](http://www.hmdb.ca/) | HMDB  | 5309 | 22128 | 848829 | [ TCGA-HMDB Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/The%20Human%20Metabolome%20Database%20(HMDB)/HMDB.ipynb) | [ TCGA-HMDB Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FThe%20Human%20Metabolome%20Database%20(HMDB)) |

| [The Human Protein Atlas](https://www.proteinatlas.org/) | Celline (RNA-seq)  | 17661 | 56 | 197848 | [ THPA-CL-RS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/The%20Human%20Protaein%20Atlas/The%20Human%20Protein%20Atlas%20(THPA)%20Celline%20(RNA-seq).ipynb) | [ THPA-CL-RS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FThe%20Human%20Protein%20Atlas%2FCelline%20(RNA-Seq)) |

| [The Human Protein Atlas](https://www.proteinatlas.org/) | Normal Tissue (immunohistochemisty)  | 9490 | 108 | 117708 | [ THPA-NT-I Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/The%20Human%20Protaein%20Atlas/The%20Human%20Protein%20Atlas%20(THPA)%20Normal%20Tissue%20(immunohistochemisty).ipynb) | [ THPA-NT-I Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FThe%20Human%20Protein%20Atlas%2FNormal%20Tissue%20(immunohistochemistry)%20) |

| [The Human Protein Atlas](https://www.proteinatlas.org/) | Normal Tissue (RNA-seq) | 18200 | 37 | 134717 | [ THPA-NT-RS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/The%20Human%20Protaein%20Atlas/The%20Human%20Protein%20Atlas%20(THPA)%20Normal%20Tissue%20(RNA-seq).ipynb) | [ THPA-NT-RS Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FThe%20Human%20Protein%20Atlas%2FNormal%20Tissue%20(RNA-Seq)) |

| [UK BioBank](https://www.ukbiobank.ac.uk/) | MedicationCategory-Gene Associations | 1212 | 20 | 2338 | [ UKBioBankGWAS Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/UKBioBankGWAS/UK%20BioBank%20GWAS%20MedicationCategory-SNP%20Associations.ipynb) | [ UKBioBankGWAS Data ](https://amp.pharm.mssm.edu/lincs-playground/index.php/apps/files/?dir=%2FUK%20BioBank) |

| [WikiPathways](https://www.wikipathways.org/index.php/WikiPathways) | WikiPathways | 5388 | 372 | 15503 | [ WikiPathways Script ](https://github.com/MaayanLab/HarmonizomePythonScripts/blob/master/WikiPathways/WikiPathways.ipynb) | [ WikiPathways Data ](http://amp.pharm.mssm.edu/lincs-playground/index.php/s/wUd94XHhiCUw3hE?path=%2FWikipathways) |
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