https://github.com/mahshaaban/target_talk

Code for "Integrating binding and expression data to predict transcription factors combined function" talk. KSBMB, Seoul, 2020
https://github.com/mahshaaban/target_talk

Last synced: 4 days ago
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Code for "Integrating binding and expression data to predict transcription factors combined function" talk. KSBMB, Seoul, 2020

• Host: GitHub
• URL: https://github.com/mahshaaban/target_talk
• Owner: MahShaaban
• License: gpl-3.0
• Created: 2020-08-12T06:13:26.000Z (over 4 years ago)
• Default Branch: master
• Last Pushed: 2020-10-02T03:59:35.000Z (about 4 years ago)
• Last Synced: 2023-08-03T15:25:12.495Z (over 1 year ago)
• Language: R
• Homepage: http://new.ksbmb.or.kr/academic_events_etc/academic_evt_main.php
• Size: 1.73 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# Integrating binding and expression data to predict transcription factors combined function

This talk is part of the Young Scientist Program (YSP) during the Korean Society of Biochemistry and Molecular Biology (KSBMB) conference in Seoul, August 24-26, 2020.

Related:

[R package](https://github.com/MahShaaban/target),

[Replicaiton paper](https://github.com/ReScience/ReScience-submission/pull/59),

[BMC Genomics paper](https://github.com/BCMSLab/target_ranking)

# What's in this repo?

This repo contains the talk slides as well as the code to generate the graphs in it. Some of the graphs are part of other repos which were linked to as submodules to avoid repetition.

- [`presentation_slides.pdf`](presentation_slides.pdf) the pdf for the slides

- [`poster.pdf`](poster.pdf) a related poster

- `scripts/functions.R` generates the graphs describing the model

- `scripts/copy_figures.R` copies the graphs from other submodules to the slides folder

- `slides_ol/` (private) overleaf project folder

- `poster_ol/` (private) overleaf project folder

- `target_ranking/` a github repo for the paper on which this talk is based