https://github.com/marctc/metapynets

Metabolic pathways aligment using Petri nets
https://github.com/marctc/metapynets

Last synced: 28 days ago
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Metabolic pathways aligment using Petri nets

• Host: GitHub
• URL: https://github.com/marctc/metapynets
• Owner: marctc
• License: gpl-2.0
• Created: 2013-12-07T12:36:07.000Z (almost 11 years ago)
• Default Branch: master
• Last Pushed: 2017-12-30T19:04:15.000Z (almost 7 years ago)
• Last Synced: 2024-04-15T22:54:59.586Z (7 months ago)
• Language: Python
• Size: 7.63 MB
• Stars: 2
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
metapynets

==========

Metabolic pathways aligment using Petri nets. `metapynets` is an implementation  of algorithm described on the

paper [Local piecewise alignment of metabolic pathways][1]. It allows compare two metabolic pathways represented as Petri

nets in PNML (Petri Net Markup Language).

- Install dependencies: 

`pip install -r requirements.txt`

- Usage:

`python metapynets.py pnml/pnml_hsa00010.xml pnml/pnml_mmu00010.xml`

[1]: http://bulma.net/~marctc/PosterBiotecno.pdf "Local piecewise alignment of metabolic pathways"