https://github.com/marijanbeg/2021-paper-jupyter-reproducible-workflows

Using Jupyter for reproducible scientific workflows
https://github.com/marijanbeg/2021-paper-jupyter-reproducible-workflows

binder bsd-3-clause computational-magnetism computational-mathematics horizon2020 jupyter linux macos magnetism mathematics micromagnetics opendreamkit paper physics python reproducibility scientific-workflows ubermag windows workflow

Last synced: 12 days ago
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Using Jupyter for reproducible scientific workflows

• Host: GitHub
• URL: https://github.com/marijanbeg/2021-paper-jupyter-reproducible-workflows
• Owner: marijanbeg
• License: bsd-3-clause
• Created: 2020-12-21T09:59:17.000Z (about 4 years ago)
• Default Branch: master
• Last Pushed: 2022-06-09T20:25:24.000Z (over 2 years ago)
• Last Synced: 2024-11-13T08:11:57.139Z (2 months ago)
• Topics: binder, bsd-3-clause, computational-magnetism, computational-mathematics, horizon2020, jupyter, linux, macos, magnetism, mathematics, micromagnetics, opendreamkit, paper, physics, python, reproducibility, scientific-workflows, ubermag, windows, workflow
• Language: Jupyter Notebook
• Homepage:
• Size: 226 KB
• Stars: 0
• Watchers: 0
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Citation: CITATION.cff

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README

        
# Using Jupyter for reproducible scientific workflows

Marijan Beg1, Juliette Taka2, Thomas Kluyver3, Alexander Konovalov4, Min Ragan-Kelley5,

Nicolas Thiéry6, and Hans Fangohr7

1 *Faculty of Engineering and Physical Sciences, University of Southampton, Southampton SO17 1BJ, United Kingdom*  

2 *Logilab, 75013 Paris, France*  

3 *European XFEL GmbH, 22869 Schenefeld, Germany*  

4 *School of Computer Science, University of St Andrews, St Andrews KY16 9AJ, United Kingdom*  

5 *Simula Research Laboratory, 1364 Fornebu, Norway*  

6 *Laboratoire de Recherche en Informatique, Université Paris-Saclay, CNRS, 91405 Orsay, France*  

7 *Max Planck Institute for the Structure and Dynamics of Matter, 22761 Hamburg, Germany*  

| Description | Badge |

| --- | --- |

| Paper | [![Paper](https://img.shields.io/badge/Computing%20in%20Science%20%26%20Engineering-23:36%20(2021)-blue)](https://ieeexplore.ieee.org/document/9325550) |

| Preprint | [![Preprint](https://img.shields.io/badge/arXiv-2102.09562-green.svg)](https://arxiv.org/abs/2102.09562) |

| Tests | [![Build status](https://github.com/marijanbeg/2021-paper-jupyter-reproducible-workflows/workflows/workflow/badge.svg)](https://github.com/marijanbeg/2021-paper-jupyter-reproducible-workflows/actions) |

| Binder | [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/marijanbeg/2021-paper-jupyter-reproducible-workflows/HEAD?labpath=notebooks%2Fuse-case-ubermag.ipynb) |

| License | [![License](https://img.shields.io/badge/License-BSD%203--Clause-blue.svg)](https://opensource.org/licenses/BSD-3-Clause) |

| DOI | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4382224.svg)](https://doi.org/10.5281/zenodo.4382224) |

## About

This repository contains all the necessary data and information required to reproduce Figure 3 in:

- M. Beg, J. Taka, T. Kluyver, A. Konovalov, M. Ragan-Kelley, N. Thiéry, and H. Fangohr. Using Jupyter for reproducible scientific workflows. [*Computing in Science & Engineering* **23**, 36](https://ieeexplore.ieee.org/document/9325550/) (2021).

## Binder

You can run the Jupyter notebook in the cloud via Binder. To access Binder, use the badge in the table above.

## License

Licensed under the BSD 3-Clause "New" or "Revised" License. For details, please refer to the [LICENSE](LICENSE) file.

## How to cite

1. M. Beg, J. Taka, T. Kluyver, A. Konovalov, M. Ragan-Kelley, N. Thiéry, and H. Fangohr. Using Jupyter for reproducible scientific workflows. [*Computing in Science & Engineering* **23**, 36](https://ieeexplore.ieee.org/document/9325550/) (2021).

2. M. Beg, J. Taka, T. Kluyver, A. Konovalov, M. Ragan-Kelley, N. Thiéry, and H. Fangohr. Accompanying repository for "Using Jupyter for reproducible scientific workflows". GitHub: https://github.com/marijanbeg/2021-paper-jupyter-reproducible-workflows, DOI: [10.5281/zenodo.4382224](https://zenodo.org/record/4382224) (2021).

## Acknowledgments

- [OpenDreamKit](http://opendreamkit.org/) – Horizon 2020 European Research Infrastructure project (676541)

- EPSRC Programme Grant on [Skyrmionics](http://www.skyrmions.ac.uk) (EP/N032128/1)