https://github.com/mariusgiger/data-science-template

Skeleton repository for data science tasks.
https://github.com/mariusgiger/data-science-template

Last synced: 12 days ago
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Skeleton repository for data science tasks.

• Host: GitHub
• URL: https://github.com/mariusgiger/data-science-template
• Owner: mariusgiger
• Created: 2020-02-18T13:00:45.000Z (almost 5 years ago)
• Default Branch: master
• Last Pushed: 2022-05-24T17:20:26.000Z (over 2 years ago)
• Last Synced: 2024-11-09T05:38:08.338Z (2 months ago)
• Language: Jupyter Notebook
• Size: 1.12 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 12
• Metadata Files:
  • Readme: README.md

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README

        
# Data science template

Repository holding template structure for data science.

## TL;DR

```

curl -s -L https://raw.githubusercontent.com/mariusgiger/data-science-template/master/setup.sh | bash

```

## Work

run the following command:

```{.sh}

./start.sh

```

This will enter the virtual environment and start `jupyter`. Stop it by pressing `Ctrl-c`.

You can enter the virtual env manually by running:

```{.sh}

source bin/activate

```

You can then install dependencies:

```{.sh}

pip install 

```

Freeze the current dependencies:

```{.sh}

pip freeze > requirements.txt

```

Upgrade all packages:

```

pip list --outdated --format=freeze | grep -v '^\-e' | cut -d = -f 1  | xargs -n1 pip install -U

pip freeze > requirements.txt

```

Install `jupyter` extensions:

```

pip install -U jupyter_contrib_nbextensions

jupyter contrib nbextension install --sys-prefix

jupyter nbextension enable code_prettify/autopep8

```

Leave the virtual env using the following command:

```{.sh}

deactivate

```

## Troubleshooting

To fix a broken environment, run the following commands

```

rm -rf .Python bin/python* lib/python*/* include/python*

pip3 install -U virtualenv

virtualenv -p python3 .

source ./bin/activate

python3 -m pip install --upgrade pip

pip install -r requirements.txt

pip install -U jupyter_contrib_nbextensions

jupyter contrib nbextension install --sys-prefix

jupyter nbextension enable code_prettify/autopep8

ipython kernel install --user --name $project_name --display-name "Python ($project_name)"

```

## Useful Links

- https://medium.com/@eleroy/jupyter-notebook-in-a-virtual-environment-virtualenv-8f3c3448247