https://github.com/markovmodel/msmtools

Tools for estimating and analyzing Markov state models
https://github.com/markovmodel/msmtools

analysis markov-model markov-state-model

Last synced: about 1 year ago
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Tools for estimating and analyzing Markov state models

• Host: GitHub
• URL: https://github.com/markovmodel/msmtools
• Owner: markovmodel
• License: lgpl-3.0
• Created: 2015-07-02T13:39:32.000Z (almost 11 years ago)
• Default Branch: devel
• Last Pushed: 2022-08-15T08:25:05.000Z (almost 4 years ago)
• Last Synced: 2025-04-22T12:35:59.165Z (about 1 year ago)
• Topics: analysis, markov-model, markov-state-model
• Language: Python
• Homepage:
• Size: 1.75 MB
• Stars: 40
• Watchers: 10
• Forks: 27
• Open Issues: 0
• Metadata Files:
  • Readme: README.rst
  • Changelog: CHANGELOG.md
  • License: LICENSE.txt

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README

          
**This package will soon be no longer or only very sparsely maintained in favor of** `deeptime `__.

MSMTools

========

What is it?

-----------

msmtools is an open source collection of algorithms for the estimation

and analysis of discrete state space Markov chains via Markov state

models (MSM).

The algorithms are implemented using `NumPy `_

and `SciPy `_.

Installation

------------

With pip::

     pip install msmtools

with conda::

     conda install -c conda-forge msmtools

or install latest devel branch with pip::

     pip install git+https://github.com/markovmodel/msmtools.git@devel

Support and development

-----------------------

For bug reports/suggestions/complains please file an issue on

`GitHub `__.

Or start a discussion on our mailing list: pyemma-users@lists.fu-berlin.de