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https://github.com/markovmodel/pystallone

Python bridge to Java Stallone library
https://github.com/markovmodel/pystallone

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Python bridge to Java Stallone library

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==========
PyStallone
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.. image:: https://travis-ci.org/cmb-fu/pystallone.svg
:target: https://travis-ci.org/cmb-fu/pystallone
.. image:: https://readthedocs.org/projects/pystallone/badge/?version=latest
:target: https://pystallone.readthedocs.org/en/latest/

This package is a Python binding for the Stallone Java library, which is an
effort to combine multiple tools for building Markov models from molecular
trajectory data.

It provides a high level API for:

* wrapping data (trajectories, math structures)
* (linear) algebra
* discretize MD trajectories
* perform coordinate transformations
* multiple methods for estimate Markov models
* generate trajectories from potential
* free energy estimation
* ...

For more information have a look at the current Stallone website:
http://github.com/markovmodel/pystallone