https://github.com/matham/cell-meta-3d

Napari plugin that extracts 3d cell size and other metadata for Brainglobe detected cells.
https://github.com/matham/cell-meta-3d

Last synced: 11 months ago
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Napari plugin that extracts 3d cell size and other metadata for Brainglobe detected cells.

• Host: GitHub
• URL: https://github.com/matham/cell-meta-3d
• Owner: matham
• License: mit
• Created: 2025-06-23T20:28:21.000Z (about 1 year ago)
• Default Branch: main
• Last Pushed: 2025-06-28T03:58:20.000Z (about 1 year ago)
• Last Synced: 2025-06-28T04:31:10.765Z (about 1 year ago)
• Language: Python
• Size: 22.5 KB
• Stars: 0
• Watchers: 0
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# cell-meta-3d

[![License MIT](https://img.shields.io/pypi/l/cell-meta-3d.svg?color=green)](https://github.com/matham/cell-meta-3d/raw/main/LICENSE)

[![PyPI](https://img.shields.io/pypi/v/cell-meta-3d.svg?color=green)](https://pypi.org/project/cell-meta-3d)

[![Python Version](https://img.shields.io/pypi/pyversions/cell-meta-3d.svg?color=green)](https://python.org)

[![tests](https://github.com/matham/cell-meta-3d/workflows/tests/badge.svg)](https://github.com/matham/cell-meta-3d/actions)

[![codecov](https://codecov.io/gh/matham/cell-meta-3d/branch/main/graph/badge.svg)](https://codecov.io/gh/matham/cell-meta-3d)

[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/cell-meta-3d)](https://napari-hub.org/plugins/cell-meta-3d)

[![npe2](https://img.shields.io/badge/plugin-npe2-blue?link=https://napari.org/stable/plugins/index.html)](https://napari.org/stable/plugins/index.html)

[![Copier](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-purple.json)](https://github.com/copier-org/copier)

Plugin that extracts 3d cell size and other metadata for Brainglobe detected cells.

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This [napari] plugin was generated with [copier] using the [napari-plugin-template].

## Installation

You can install `cell-meta-3d` via [pip]:

    pip install cell-meta-3d

To install latest development version :

    pip install git+https://github.com/matham/cell-meta-3d.git

## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure

the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [MIT] license,

"cell-meta-3d" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari

[copier]: https://copier.readthedocs.io/en/stable/

[@napari]: https://github.com/napari

[MIT]: http://opensource.org/licenses/MIT

[BSD-3]: http://opensource.org/licenses/BSD-3-Clause

[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt

[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt

[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0

[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt

[napari-plugin-template]: https://github.com/napari/napari-plugin-template

[file an issue]: https://github.com/matham/cell-meta-3d/issues

[napari]: https://github.com/napari/napari

[tox]: https://tox.readthedocs.io/en/latest/

[pip]: https://pypi.org/project/pip/

[PyPI]: https://pypi.org/