https://github.com/matteocargnelutti/maguire-lab-seizure-detection-webapp

🧠 Maguire Lab's Deep Learning Seizure Detection WebApp.
https://github.com/matteocargnelutti/maguire-lab-seizure-detection-webapp

data-science eeg-signals-processing neuroscience

Last synced: about 1 month ago
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🧠 Maguire Lab's Deep Learning Seizure Detection WebApp.

• Host: GitHub
• URL: https://github.com/matteocargnelutti/maguire-lab-seizure-detection-webapp
• Owner: matteocargnelutti
• License: apache-2.0
• Created: 2020-11-16T20:54:16.000Z (about 4 years ago)
• Default Branch: main
• Last Pushed: 2022-12-18T17:47:39.000Z (about 2 years ago)
• Last Synced: 2023-02-28T03:13:18.070Z (almost 2 years ago)
• Topics: data-science, eeg-signals-processing, neuroscience
• Language: JavaScript
• Homepage: https://deep-seizure-detect.herokuapp.com
• Size: 17.4 MB
• Stars: 11
• Watchers: 1
• Forks: 3
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# Maguire Lab's Deep Learning Seizure Detection WebApp

🧠 In-browser detection of seizure activity from single-channel LFP/EEG brain recordings using deep learning.

**Try it online:** https://deep-seizure-detect.herokuapp.com

![App screenshot](__github/app-on-computer.png)

## How does it work

- Provide the app with a CSV file containing rodent EEG data, where each row is a sequence of 500 samples at 100 Hz. 

[ℹ️ More info](https://deep-seizure-detect.herokuapp.com/static/img/data-format.png) - [📄 Example](https://deep-seizure-detect.herokuapp.com/static/samples/sample_149_sequences_with_seizures.csv)

- The app will read the file and send it by chunks to our server, where our machine learning algorithm runs. Nothing is stored on our end.

- Once the whole file has been processed, the app generates a dynamic visualization allowing verification, editing and export of the results.

---

## About the model

The model is a convolutional neural net that was built using [Keras](https://keras.io/) API with a Tensorflow-backend. It was trained on LFP data from

chronically epileptic mice that were generated using intra-hippocampal kainate injections by [Dr. Trina Basu](https://twitter.com/trina_basu).

---

## Authors, license and intended use

Built with the [Maguire Lab at Tufts University](https://www.maguirelab.com/) by:

Matteo Cargnelutti | Pantelis Antonoudiou, PhD

------------------ | --------------------------

![Matteo Cargnelutti - Avatar](https://avatars3.githubusercontent.com/u/625889?s=460&u=a116df5de22bd9dcb9d33d88318771db4510ca22&v=4) | ![Pantelis Antonoudiou - Avatar](https://avatars3.githubusercontent.com/u/29359722?s=460&u=830a8a3512fb5971af07ab8cc043a7283c93f1c2&v=4)

Software Development | Data Science

Boston, USA / France 🇫🇷 | Boston, USA / Cyprus 🇨🇾

[@matteocargnelutti](https://github.com/matteocargnelutti)| [@pantelisantonoudiou](https://github.com/pantelisantonoudiou)

This open-source software is distributed under [the Apache 2.0 License](/LICENSE).

This software was built and made available for research purposes only and is intended for use on rodent data.

---

## Resources and references

["How Deep Learning Solved My Seizure Detection Problems"](https://journals.sagepub.com/doi/10.1177/1535759720948430). 

Commentary by Pantelis Antonoudiou and Jamie Maguire on Epilepsy Currents, Sept 2 2020.

---

## Acknowledgments

Many thanks to [Dr. Trina Basu](https://twitter.com/trina_basu) for allowing us to use some of her data to build the model and test the application.

---

## A bug to report? A question? An idea to suggest? 

Please [contact us via the _issues_ section](https://github.com/matteocargnelutti/maguire-lab-seizure-detection-webapp/issues).

⚠️ **Current version:** v0.2 Alpha