https://github.com/matthewdeanmartin/pdb-data-mining

PDB Data Mining
https://github.com/matthewdeanmartin/pdb-data-mining

Last synced: 19 days ago
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PDB Data Mining

• Host: GitHub
• URL: https://github.com/matthewdeanmartin/pdb-data-mining
• Owner: matthewdeanmartin
• Created: 2015-06-17T18:00:37.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2015-06-17T05:35:34.000Z (over 9 years ago)
• Last Synced: 2024-04-16T04:51:43.855Z (9 months ago)
• Language: Python
• Size: 58.6 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
PDB Data Mining

Author: Vladislav Martin

Workplace: Frick Chemistry Laboratory, Princeton University

Reason: Molecular Biophysics REU Program

Beneficiary: Jannette Carey, Principal Investigator

CONTENTS

1. download_ftp.py - Download and decompress protein structures from the wwPDB FTP site

2. parse_xml.py - Extract relevant data from acceptable protein structures

	+ Criteria defining what is "acceptable" can be found in the source code

3. database_sql.py - Store relevant data from acceptable protein structures into a database

4. Packages directory - FOR FUTURE USE... Stores all third-party Python packages that I may use in future development