https://github.com/matthiaskoenig/tellurium-cas
CombineArchiveShowcase with tellurium
https://github.com/matthiaskoenig/tellurium-cas
Last synced: 4 months ago
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CombineArchiveShowcase with tellurium
- Host: GitHub
- URL: https://github.com/matthiaskoenig/tellurium-cas
- Owner: matthiaskoenig
- Created: 2017-10-19T09:11:38.000Z (over 7 years ago)
- Default Branch: master
- Last Pushed: 2017-10-19T10:46:46.000Z (over 7 years ago)
- Last Synced: 2025-01-04T20:24:39.893Z (5 months ago)
- Language: Jupyter Notebook
- Size: 3.35 MB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# tellurium-cas
This repository demonstrates how to run the [CombineArchiveShowCase](https://github.com/SemsProject/CombineArchiveShowCase)
with [tellurium](http://tellurium.analogmachine.org/).
The results of the archive execution are available in
[./tellurium-cas.ipynb](./tellurium-cas.ipynb)
and the output folder
[./results/output](./results/output)
## Running the CombineShowCase archive
Clone the repository
```
git clone https://github.com/matthiaskoenig/tellurium-cas.git
cd tellurium-cas
```
Create a python virtual environment with [tellurium](http://tellurium.analogmachine.org/)
```
mkvirtualenv tellurium-cas
(tellurium-cas) pip install -r requirements.txt
```
Register kernel & run jupyter notebook
```
(tellurium-cas) python -m ipykernel install --user --name=tellurium-cas
(tellurium-cas) jupyter notebook tellurium-cas.ipynb
```
Run the notebook
```
Kernel -> Change Kernel -> tellurium-cas
Kernel -> Restart & Run All
```
