https://github.com/mayurdivate/bamtrimmer

GUI tool to preprocess whole genome / exome sequencing data. This tool is designed to prepare input data for https://www.rbceq.org/.
https://github.com/mayurdivate/bamtrimmer

Last synced: 7 months ago
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GUI tool to preprocess whole genome / exome sequencing data. This tool is designed to prepare input data for https://www.rbceq.org/.

• Host: GitHub
• URL: https://github.com/mayurdivate/bamtrimmer
• Owner: MayurDivate
• Created: 2019-10-02T00:30:54.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2021-12-01T01:19:18.000Z (over 4 years ago)
• Last Synced: 2024-12-26T18:23:51.202Z (over 1 year ago)
• Language: Java
• Homepage:
• Size: 18.7 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# BamTrimmer

It takes aligned BAM and output directory as an input.

First, it discards all the reads which are not aligned to blood group genes.

Then, it removes duplicate reads and generate the BAM index. 

Lastly, it calculates the overall coverage for blood group genes.

![RBCeq](rbceq.png)