https://github.com/mbarbetti/hello-snakemake

Simple implementation of snakemake to sample and plot data
https://github.com/mbarbetti/hello-snakemake

hello-world matplotlib numpy python snakemake

Last synced: 10 days ago
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Simple implementation of snakemake to sample and plot data

• Host: GitHub
• URL: https://github.com/mbarbetti/hello-snakemake
• Owner: mbarbetti
• License: mit
• Created: 2022-08-01T17:09:16.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2022-08-01T20:37:54.000Z (over 2 years ago)
• Last Synced: 2024-10-11T04:51:13.450Z (about 1 month ago)
• Topics: hello-world, matplotlib, numpy, python, snakemake
• Language: Python
• Homepage:
• Size: 3.91 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# Hello world, snakemake! 🐍

Simple implementation of snakemake to sample and plot data

### Contents

1. The rule `sample-rule` produces .npz file containing data sampled accordingly to {'normal', 'uniform', 'exponential', 'lognormal'} distribution

2. The rule `plot-rule` produces a histogram figure filled with the data sampled by the previous snakemake rule

3. The rule `all` produces all the .npz files and the histogram figures 

### Dependencies

`hello-snakemake` requires:

* snakemake

* NumPy

* Matplotlib

### Running example

```shell

snakemake all --forceall

```