https://github.com/mc256/genomic_tandem_repeat_detection

York University EECS4425 Project
https://github.com/mc256/genomic_tandem_repeat_detection

Last synced: 10 months ago
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York University EECS4425 Project

• Host: GitHub
• URL: https://github.com/mc256/genomic_tandem_repeat_detection
• Owner: mc256
• Created: 2018-11-25T22:02:55.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2018-12-13T16:33:18.000Z (over 7 years ago)
• Last Synced: 2025-03-18T04:43:22.335Z (about 1 year ago)
• Language: Python
• Homepage: https://www.eecs.yorku.ca/course_archive/2018-19/F/4425/
• Size: 13.6 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: ReadMe.md

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README

          
# LSTM-based Tandem Repeat Detector

To run this python code, you must have a Nvidia Video card with CUDA Compute Capability greater than 8.0. You may also need to install the following python packages:

- pytorch

- matplotlib

- biopython

- numpy

Please be awared that some parameters of the LSTM is changed across the files. Therefore, some **pkl** files may not fit in to some programs.

The best result is the **.py** file having the largest number, e.g. **test[_LARGEST NUMBER_]_{some_feature_name}**.