https://github.com/mcanouil/eggla

Early Growth Genetics Longitudinal Analysis
https://github.com/mcanouil/eggla

genetics growth-curves infancy longitudinal-analysis mixed-effects-models r r-package r-stats spline-regression

Last synced: 5 months ago
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Early Growth Genetics Longitudinal Analysis

• Host: GitHub
• URL: https://github.com/mcanouil/eggla
• Owner: mcanouil
• License: other
• Created: 2020-11-13T10:56:46.000Z (about 5 years ago)
• Default Branch: main
• Last Pushed: 2024-11-06T07:04:43.000Z (about 1 year ago)
• Last Synced: 2024-11-06T08:18:10.006Z (about 1 year ago)
• Topics: genetics, growth-curves, infancy, longitudinal-analysis, mixed-effects-models, r, r-package, r-stats, spline-regression
• Language: R
• Homepage: https://m.canouil.dev/eggla/
• Size: 48.4 MB
• Stars: 2
• Watchers: 3
• Forks: 1
• Open Issues: 3
• Metadata Files:
  • Readme: README.Rmd
  • Changelog: NEWS.md
  • Contributing: .github/CONTRIBUTING.md
  • License: LICENSE
  • Code of conduct: .github/CODE_OF_CONDUCT.md
  • Citation: CITATION.cff
  • Support: .github/SUPPORT.md

Awesome Lists containing this project

• jimsghstars - mcanouil/eggla - Early Growth Genetics Longitudinal Analysis. (R)

README

          
---

output: github_document

---

# EGG Longitudinal Analysis 

[![GitHub

tag](https://img.shields.io/github/tag/mcanouil/eggla.svg?label=latest%20tag&include_prereleases)](https://github.com/mcanouil/eggla)

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6979433.svg)](https://doi.org/10.5281/zenodo.6979433)  

[![codecov](https://codecov.io/gh/mcanouil/eggla/branch/main/graph/badge.svg?token=D0R3SAZTWA)](https://codecov.io/gh/mcanouil/eggla)

[![R-CMD-check](https://github.com/mcanouil/eggla/actions/workflows/check.yml/badge.svg)](https://github.com/mcanouil/eggla/actions/workflows/check.yml)

Tools for longitudinal analysis within the [EGG (Early Growth Genetics) Consortium](http://egg-consortium.org/).

## Installation

* Install [`pak`](https://pak.r-lib.org/)

  ```r

  temp_library <- file.path(".", "R")

  dir.create(temp_library, recursive = TRUE)

  .libPaths(temp_library)

  utils::install.packages(

    pkgs = "pak",

    lib = temp_library,

    repos = sprintf(

      "https://r-lib.github.io/p/pak/stable/%s/%s/%s",

      .Platform[["pkgType"]], R.Version()[["os"]], R.Version()[["arch"]]

    )

  )

  ```

* Install `eggla` and its dependencies

  ```r

  library(pak)

  VERSION <- "latest"

  utils::download.file(

    url = sprintf(

      "https://raw.githubusercontent.com/mcanouil/eggla/%s/.github/.devcontainer/eggla/R/pkg.lock",

      VERSION

    ),

    destfile = "pkg.lock"

  )

  lockfile_install(lockfile = "pkg.lock", lib = temp_library)

  pkg_install(sprintf("mcanouil/eggla@%s", VERSION), lib = temp_library, upgrade = FALSE, dependencies = FALSE)

  ```

## Docker Images

- `docker pull ghcr.io/mcanouil/eggla:devel`.

- `docker pull ghcr.io/mcanouil/eggla:latest`.

## License

MIT © [Mickaël Canouil](https://mickael.canouil.fr/), Nicole Warrington, Kimberley Burrows, and Anni Heiskala.

## Code of Conduct

Please note that the `eggla` project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html).  

By contributing to this project, you agree to abide by its terms.