https://github.com/mcs07/chemdataextractor

Automatically extract chemical information from scientific documents
https://github.com/mcs07/chemdataextractor

chemistry information-extraction natural-language-processing nlp python text-mining

Last synced: 5 days ago
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Automatically extract chemical information from scientific documents

• Host: GitHub
• URL: https://github.com/mcs07/chemdataextractor
• Owner: mcs07
• License: mit
• Created: 2016-10-02T23:50:01.000Z (about 8 years ago)
• Default Branch: master
• Last Pushed: 2023-07-27T18:05:13.000Z (over 1 year ago)
• Last Synced: 2024-10-28T15:39:21.649Z (16 days ago)
• Topics: chemistry, information-extraction, natural-language-processing, nlp, python, text-mining
• Language: Python
• Homepage: http://chemdataextractor.org
• Size: 542 KB
• Stars: 308
• Watchers: 18
• Forks: 113
• Open Issues: 24
• Metadata Files:
  • Readme: README.rst
  • Changelog: CHANGELOG.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE

Awesome Lists containing this project

README

        
ChemDataExtractor

=================

.. image:: http://img.shields.io/pypi/v/ChemDataExtractor.svg?style=flat-square

    :target: https://pypi.python.org/pypi/ChemDataExtractor

.. image:: http://img.shields.io/pypi/l/ChemDataExtractor.svg?style=flat-square

    :target: https://github.com/mcs07/ChemDataExtractor/blob/master/LICENSE

.. image:: http://img.shields.io/travis/mcs07/ChemDataExtractor.svg?style=flat-square

    :target: https://travis-ci.org/mcs07/ChemDataExtractor

ChemDataExtractor is a toolkit for extracting chemical information from the scientific literature.

Features

--------

- HTML, XML and PDF document readers

- Chemistry-aware natural language processing pipeline

- Chemical named entity recognition

- Rule-based parsing grammars for property and spectra extraction

- Table parser for extracting tabulated data

- Document processing to resolve data interdependencies

Installation

------------

To install ChemDataExtractor, simply run::

    pip install chemdataextractor

Or if you are an Anaconda user, run::

    conda install -c chemdataextractor chemdataextractor

Alternatively, try one of the other `installation options`_.

Documentation

-------------

Full documentation is available at http://chemdataextractor.org/docs

License

-------

ChemDataExtractor is licensed under the `MIT license`_, a permissive, business-friendly license for open source

software.

.. _`installation options`: http://chemdataextractor.org/docs/install

.. _`MIT license`: https://github.com/mcs07/ChemDataExtractor/blob/master/LICENSE