https://github.com/mdanalysis/workshophackathon2018
Materials, issues and things for the 2018 Workshop and Hackathon
https://github.com/mdanalysis/workshophackathon2018
Last synced: about 1 year ago
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Materials, issues and things for the 2018 Workshop and Hackathon
- Host: GitHub
- URL: https://github.com/mdanalysis/workshophackathon2018
- Owner: MDAnalysis
- License: gpl-3.0
- Created: 2018-08-22T02:46:28.000Z (almost 8 years ago)
- Default Branch: master
- Last Pushed: 2020-03-05T00:54:03.000Z (over 6 years ago)
- Last Synced: 2024-10-29T17:22:49.784Z (over 1 year ago)
- Language: Jupyter Notebook
- Homepage: https://www.mdanalysis.org/WorkshopHackathon2018/
- Size: 84.4 MB
- Stars: 14
- Watchers: 10
- Forks: 25
- Open Issues: 4
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# WorkshopHackathon 2018
This repo holds all the materials for the MDAnalysis 2018 Workshop and Hackathon.
Materials are organised according to the Workshop schedule.
## Before the workshop
The workshop will be hands-on. You will need a working installation of
[MDAnalysis](https://www.mdanalysis.org) and related packages
including data to analyze in order to participate. The full
installation may take up to about 1 GB of space (mostly for data,
which you can delete after the workshop). Because downloading and
installing everything will take a while **you should install
everything before coming to the workshop**.
Follow the [installation instructions](INSTALL.md) — Windows, macOS, and
Linux are all supported.
## Time and Location
The workshop takes place on Nov 12 and Nov 13, 2016 at Northwestern
University, 2nd floor of [Mudd
Library](https://www.library.northwestern.edu/libraries-collections/mudd-library/index.html),
2233 Tech Drive, Evanston, IL 60208, in the
[classroom](https://www.library.northwestern.edu/visit/maps/mudd-library/index.html).
## Conduct
All participants agree to abide by the [MDAnalysis Code of
Conduct](https://www.mdanalysis.org/pages/conduct/).
## Workshop Schedule
Day 1:
- 08:30 Breakfast & Coffee ☕
- 09:00 [Intro to MDAnalysis](01_IntroToMDAnalysis)
- 10:00 ☕ Coffee! ☕
- 10:30 [Intro to Numpy](02_IntroToNumpy)
- 12:00 Lunch break
- 13:00 MDAnalysis Tutorials
- [Part 1 - Introduction to MDAnalysis objects](03_Tutorial1)
- [Part 2 - Dealing with distance calculations and trajectories](04_Tutorial2)
- [Part 3 - Using advanced analysis features](05_Tutorial3)
- 14:30 ☕ Coffee! ☕
- 15:00 [Advanced materials](06_AdvancedTutorials)
- 17:00 End of day 1
- 17:30 Workshop social
Day 2:
- 08:30 Breakfast & Coffee ☕
- 09:00 [Intro to Dask](07_DaskTutorial)
- 10:00 ☕ Coffee! ☕
- 10:30 [Parallel MDA](08_PMDATutorial)
- 12:00 Lunch break
- 13:00 [Intro to open source development](09_DevelopmentTutorial)
- 14:30 ☕ Coffee! ☕
- 15:00 Hackathon
- 17:00 End of day 2
## Workshop Materials
To make your own copy of these materials on your computer, run this from the command line:
```
git clone https://github.com/MDAnalysis/WorkshopHackathon2018.git
```