https://github.com/menchelab/sctools
Collection of helper functions to make large scale single cell analysis more bearable
https://github.com/menchelab/sctools
Last synced: 4 months ago
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Collection of helper functions to make large scale single cell analysis more bearable
- Host: GitHub
- URL: https://github.com/menchelab/sctools
- Owner: menchelab
- License: mit
- Created: 2024-09-18T06:46:49.000Z (over 1 year ago)
- Default Branch: main
- Last Pushed: 2025-03-25T12:47:52.000Z (about 1 year ago)
- Last Synced: 2025-03-25T13:42:10.062Z (about 1 year ago)
- Language: Python
- Size: 143 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# sctools
Collection of helper functions to make large scale single cell analysis more bearable. Examples include integration with scVI, gene score computations (eigengenes etc.) or estimating the effect sizes of introduced perturbations.
## Installation
To install simply clone the repository and run `pip install .` from within the cloned directory like so
```
git clone git@github.com:menchelab/sctools.git
cd sctools
pip install .
```
## Citation
If you use it please consider citing [Neuwirth & Malzl et al.](https://doi.org/10.1101/2024.03.25.586519)