https://github.com/metexplore/insilico_metabolic_analyses_tutorials_and_courses
In this repo are listed all the public resources to learn in silico metabolic analyses
https://github.com/metexplore/insilico_metabolic_analyses_tutorials_and_courses
Last synced: 4 months ago
JSON representation
In this repo are listed all the public resources to learn in silico metabolic analyses
- Host: GitHub
- URL: https://github.com/metexplore/insilico_metabolic_analyses_tutorials_and_courses
- Owner: MetExplore
- Created: 2025-06-20T09:32:43.000Z (12 months ago)
- Default Branch: main
- Last Pushed: 2025-09-01T06:02:25.000Z (9 months ago)
- Last Synced: 2025-09-01T08:49:07.528Z (9 months ago)
- Size: 5.86 KB
- Stars: 0
- Watchers: 0
- Forks: 1
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# Courses and tutorials for in silico metabolic analyses
In this repo are listed all the public resources to learn how to proceed in silico metabolic analyses with various software.
## Metabolism exploration and mapping
- [MetExplore 2 tutorial](https://metexplore.pages-forge.inrae.fr/metexplore-web/metexplore-training/)
- [MetExplore 3 tutorial](https://metexplore.pages-forge.inrae.fr/metexplore-web/metexplore3-training/)
## Metabolic modelling
### Flux Balance Analysis
- [Introduction to flux balance analysis (protocols.io)](https://www.protocols.io/view/introduction-to-flux-balance-analysis-fba-rm7vzjm7rlx1/v1)
- [Cobrapy notebook](https://notebook.community/JuBra/cobrapy/documentation_builder/simulating)
- [Cobra matlab tutorial on ecoli_core](https://opencobra.github.io/cobratoolbox/stable/tutorials/tutorialEcoliCoreModel_part1.html)
- [MetExplore 2 flux tutorial](https://metexplore.pages-forge.inrae.fr/metexplore-web/metexplore-training/docs/flux/)
### Topology-based modelling
- [EBAME tutorial on metabolic network reconstruction and modelling - from the individual to the community](https://gitlab.inria.fr/cfrioux/ebame)