https://github.com/michabirklbauer/peptide_matching_game

Peptide Matching Game
https://github.com/michabirklbauer/peptide_matching_game

database-search educational game mass-spectrometry peptide-spectrum-matches psm

Last synced: about 1 month ago
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Peptide Matching Game

• Host: GitHub
• URL: https://github.com/michabirklbauer/peptide_matching_game
• Owner: michabirklbauer
• License: mit
• Created: 2022-05-18T20:08:01.000Z (over 2 years ago)
• Default Branch: master
• Last Pushed: 2024-02-26T13:32:22.000Z (10 months ago)
• Last Synced: 2024-02-26T14:48:28.619Z (10 months ago)
• Topics: database-search, educational, game, mass-spectrometry, peptide-spectrum-matches, psm
• Language: Python
• Homepage:
• Size: 1.72 MB
• Stars: 1
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# Peptide Matching Game

A simple game to illustrate how peptide identification in mass spectra works

using database search engines like [MS Amanda](https://pubs.acs.org/doi/full/10.1021/pr500202e).

## Usage

**How the game works:**

- Read through the [game instructions](https://github.com/michabirklbauer/peptide_matching_game/blob/master/Game_Rules.pdf).

**Setting up the game:**

- Print the [game poster](https://github.com/michabirklbauer/peptide_matching_game/blob/master/Game_Poster.pdf).

- Print at least one copy of each spectrum in `spectrum_cards`.

- Print the [game instructions](https://github.com/michabirklbauer/peptide_matching_game/blob/master/Game_Rules.pdf) for people to understand the game.

- [Optional] Set up your own game solution browser or use [https://michabirklbauer.github.io/peptide_matching_game/](https://michabirklbauer.github.io/peptide_matching_game/) so people are able to check their solutions.

**Setting up the game solution browser:**

- Install requirements: `pip install -r requirements.txt`

- Run streamlit app: `streamlit run streamlit_app.py`

- Alternatively pull and run the docker container: `docker run -p 8501:8501 michabirklbauer/peptidematchinggame:latest`

- Open your browser and navigate to `localhost:8501`.

## References

- PDB structure [3RFM](https://www.rcsb.org/structure/3RFM) by [Dore et al.](http://dx.doi.org/10.1016/j.str.2011.06.014) is shown on the poster.

## License

- [MIT](https://github.com/michabirklbauer/peptide_matching_game/blob/master/LICENSE)

## Contact

- [[email protected]](mailto:[email protected])