https://github.com/michbur/biogram

N-Gram Analysis of Biological Sequences
https://github.com/michbur/biogram

biological-sequences ngram-analysis r

Last synced: 9 days ago
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N-Gram Analysis of Biological Sequences

• Host: GitHub
• URL: https://github.com/michbur/biogram
• Owner: michbur
• Created: 2014-08-05T12:49:21.000Z (over 10 years ago)
• Default Branch: master
• Last Pushed: 2024-08-30T20:56:26.000Z (3 months ago)
• Last Synced: 2024-10-28T17:32:50.483Z (21 days ago)
• Topics: biological-sequences, ngram-analysis, r
• Language: R
• Homepage:
• Size: 4.57 MB
• Stars: 10
• Watchers: 5
• Forks: 1
• Open Issues: 7
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG

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README

        
[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/biogram)](https://cran.r-project.org/package=biogram)

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biogram package

------------

This package contains tools for extraction and analysis of various

n-grams (sequences of n items) derived from biological sequences (proteins

or nucleic acids). To deal with the curse of dimensionality of the n-grams,

biogram uses Quick Permutation Test (QuiPT) for fast feature filtering.

Installation

------------

biogram is available [on CRAN](https://cran.r-project.org/package=biogram), so installation is as simple as:

```

install.packages("biogram")

```

You can install the latest development version of the code using the `devtools` R package.

```

# Install devtools, if you haven't already.

install.packages("devtools")

library(devtools)

install_github("michbur/biogram")

```

For citation type:

```

citation("biogram")

```

or use:

Michal Burdukiewicz, Piotr Sobczyk, Chris Lauber, Dominik Rafacz and Katarzyna Sidorczuk (2020). biogram: N-Gram Analysis of Biological Sequences. R package version 1.6.3. https://cran.r-project.org/package=biogram