https://github.com/michbur/period

Detect periodicity in in quantitative real-time polymerase data
https://github.com/michbur/period

Last synced: 9 days ago
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Detect periodicity in in quantitative real-time polymerase data

• Host: GitHub
• URL: https://github.com/michbur/period
• Owner: michbur
• Created: 2015-07-06T09:24:07.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2017-01-11T08:14:23.000Z (almost 8 years ago)
• Last Synced: 2023-08-03T17:57:24.579Z (over 1 year ago)
• Language: R
• Homepage: http://www.smorfland.uni.wroc.pl/shiny/period_app/
• Size: 158 KB
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: readme.md

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README

        
### About

  

Detect periodicity in in quantitative real-time polymerase data.  

### Reference

[A. Spiess, S. Roediger, M. Burdukiewicz, T. Volksdorf and J. Tellinghuisen. “System-specific periodicity in quantitative real-time polymerase chain reaction data questions threshold-based quantitation”. Scientific Reports 6 (2016), p. 38951. DOI: 10.1038/srep38951](http://www.nature.com/srep/2016/161213/srep38951/full/srep38951.html).

This application is a part of [pcRuniveRsum](https://michbur.github.io/pcRuniveRsum/).

### Data format

The expected input data is .csv spreadsheet with two columns (see below):

  

    Well

    CQ 

  

  

    A1

    17.22 

  

  

    A2

    17.31 

  

  

    ...

    ... 

  




If the input data is in one row (column-wise), check "Cq values are in one row" below.