https://github.com/midnighter/combine2020-equilibrator
An interactive tutorial on using eQuilibrator for including thermodynamic information in metabolic modeling. Prepared for COMBINE2020.
https://github.com/midnighter/combine2020-equilibrator
Last synced: 9 months ago
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An interactive tutorial on using eQuilibrator for including thermodynamic information in metabolic modeling. Prepared for COMBINE2020.
- Host: GitHub
- URL: https://github.com/midnighter/combine2020-equilibrator
- Owner: Midnighter
- Created: 2020-10-09T09:42:41.000Z (over 5 years ago)
- Default Branch: main
- Last Pushed: 2021-10-11T14:49:16.000Z (over 4 years ago)
- Last Synced: 2025-02-23T09:30:31.432Z (over 1 year ago)
- Language: Jupyter Notebook
- Size: 279 KB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# eQuilibrator
Presentations for the [COMBINE 2020](http://co.mbine.org/events/COMBINE_2020)
online conference:
1. [Tutorial on using eQuilibrator for thermodynamic metabolic network
analysis](notebooks/tutorial.ipynb)
1. [Breakout discussion on encoding thermodynamic information in
SBML](notebooks/breakout.ipynb)
## Usage
1. Install the requirements:
```bash
pip install -r requirements.txt
```
2. Run or modify the slides in a Jupyter notebook.
```bash
jupyter notebook
```
3. In order to convert the slides to PDF, please [follow the RISE
documentation](https://rise.readthedocs.io/en/stable/exportpdf.html).
## Copyright
This work by Moritz E. Beber is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.