https://github.com/midnighter/conifer-docker

A Docker image for the conifer utility.
https://github.com/midnighter/conifer-docker

conifer docker kraken2

Last synced: over 1 year ago
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A Docker image for the conifer utility.

• Host: GitHub
• URL: https://github.com/midnighter/conifer-docker
• Owner: Midnighter
• License: apache-2.0
• Created: 2020-12-05T21:07:18.000Z (over 5 years ago)
• Default Branch: main
• Last Pushed: 2022-02-28T19:54:28.000Z (over 4 years ago)
• Last Synced: 2025-01-04T20:15:30.004Z (over 1 year ago)
• Topics: conifer, docker, kraken2
• Language: Makefile
• Homepage:
• Size: 8.79 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# Docker Image for Conifer

[![Docker image pulls](https://img.shields.io/docker/pulls/midnighter/conifer)](https://hub.docker.com/r/midnighter/conifer)

[![License](https://img.shields.io/badge/license-Apache--2.0-blueviolet)](https://opensource.org/licenses/Apache-2.0)

[Conifer](https://github.com/Ivarz/Conifer/) is a convenient utility for

analyzing confidence scores in

[kraken2](https://github.com/DerrickWood/kraken2/)'s taxonomic sequence

classification output.

## Usage

1. You need to have [Docker](https://www.docker.com/get-started) set up

   correctly.

2. Either pull the public image

    ```

    docker pull midnighter/conifer:latest

    ```

    or build the image locally from the `Dockerfile`

    ```

    docker build --tag midnighter/conifer:latest .

    ```

3. Run conifer

    ```

    docker run --rm midnighter/conifer:latest --version

    ```

## Copyright

* Copyright © 2020, Moritz E. Beber.

* Free, open source software distributed under the [Apache Software License

  2.0](https://www.apache.org/licenses/LICENSE-2.0).