https://github.com/midnighter/metanetx-nf
A Nextflow pipeline for extracting, transforming, augmenting, and loading the MetaNetX contents into a SQL database.
https://github.com/midnighter/metanetx-nf
metanetx nextflow nextflow-pipeline
Last synced: 4 months ago
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A Nextflow pipeline for extracting, transforming, augmenting, and loading the MetaNetX contents into a SQL database.
- Host: GitHub
- URL: https://github.com/midnighter/metanetx-nf
- Owner: Midnighter
- License: apache-2.0
- Created: 2020-03-07T00:20:19.000Z (over 6 years ago)
- Default Branch: master
- Last Pushed: 2024-05-19T07:00:19.000Z (about 2 years ago)
- Last Synced: 2025-06-13T06:09:25.498Z (12 months ago)
- Topics: metanetx, nextflow, nextflow-pipeline
- Language: Nextflow
- Size: 48.8 KB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# metanetx-nf
Enrich the information coming from MetaNetX from additional sources.
## Usage
1. Set up nextflow as [described
here](https://www.nextflow.io/index.html#GetStarted).
2. If you didn't run this pipeline in a while, possibly update nextflow itself.
```
./nextflow self-update
```
3. Then run the pipeline. Please specify an email parameter out of courtesy for
logging into FTP servers.
```
./nextflow run https://github.com/Midnighter/metanetx-nf --email=your.name@place.earth
```
## Copyright
* Copyright © 2020, Moritz E. Beber.
* Free software distributed under the [Apache Software License
2.0](https://www.apache.org/licenses/LICENSE-2.0).