https://github.com/midnighter/regpy
Python based simulation of digital and analog regulatory control
https://github.com/midnighter/regpy
Last synced: 10 months ago
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Python based simulation of digital and analog regulatory control
- Host: GitHub
- URL: https://github.com/midnighter/regpy
- Owner: Midnighter
- License: other
- Created: 2013-12-04T14:21:56.000Z (over 12 years ago)
- Default Branch: master
- Last Pushed: 2013-12-04T14:24:02.000Z (over 12 years ago)
- Last Synced: 2025-02-23T09:30:28.960Z (over 1 year ago)
- Language: Python
- Size: 102 KB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.rst
- License: LICENSE.rst
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README
===========================================
Minimal Model of Analog and Digital Control
===========================================
This is intended as a tool for computational simulations of the dynamics of analog and digital control. The ideas are largely based on Fig. 1a in [1_].
Requirements
------------
* networkx_
* numpy_
.. _networkx: http://networkx.github.com/
.. _numpy: http://www.numpy.org/
Authors
-------
Former and current members of the `Computational Systems Biology workgroup`__ headed by Prof. Marc-Thorsten Hütt at Jacobs University Bremen. In alphabetical order:
* Beber, Moritz Emanuel
.. __: http://sysbio.jacobs-university.de/website/
Relevant References
-------------------
.. [1] Marr, C., Geertz, M., Hütt, M.-T., Muskhelishvili, G., 2008. 'Dissecting the logical types of network control in gene expression profiles'. BMC Systems Biology 2, 18.