https://github.com/mikelove/bioc2022allelicexpression
Bioc2022 workshop. SEESAW: Statistical Estimation Of Allelic Expression Using Salmon And Swish
https://github.com/mikelove/bioc2022allelicexpression
allelic-expression bioconductor fishpond rnaseq salmon swish
Last synced: 3 months ago
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Bioc2022 workshop. SEESAW: Statistical Estimation Of Allelic Expression Using Salmon And Swish
- Host: GitHub
- URL: https://github.com/mikelove/bioc2022allelicexpression
- Owner: mikelove
- License: other
- Created: 2022-07-01T16:41:46.000Z (almost 3 years ago)
- Default Branch: master
- Last Pushed: 2022-07-28T14:16:08.000Z (almost 3 years ago)
- Last Synced: 2025-01-22T07:51:15.587Z (4 months ago)
- Topics: allelic-expression, bioconductor, fishpond, rnaseq, salmon, swish
- Language: R
- Homepage: https://mikelove.github.io/Bioc2022AllelicExpression/
- Size: 46.1 MB
- Stars: 0
- Watchers: 1
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# Bioc2022AllelicExpression
This is a workshop package for BioC2022, showing how to use SEESAW for
allelic expression analysis. If you are browswing on GitHub, see here
for the workshop homepage:
## Workshop material
For the workshop content, see the **Get started** tab above.
The **References** tab has short descriptions of the datasets.
## Docker image:
```sh
docker run -e PASSWORD= -p 8787:8787 YOURDOCKERIMAGENAME
```
Once running, navigate to http://localhost:8787/ and then login with
`rstudio`:`yourchosenpassword`.