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https://github.com/mikelove/prenivolumabonnivolumab
EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
https://github.com/mikelove/prenivolumabonnivolumab
Last synced: 24 days ago
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EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
- Host: GitHub
- URL: https://github.com/mikelove/prenivolumabonnivolumab
- Owner: mikelove
- Created: 2022-04-10T10:47:17.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2023-05-25T01:21:07.000Z (over 1 year ago)
- Last Synced: 2024-05-09T07:53:15.792Z (6 months ago)
- Language: HTML
- Size: 6.19 MB
- Stars: 50
- Watchers: 8
- Forks: 6
- Open Issues: 3
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Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# preNivolumabOnNivolumab
EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of
immunotherapy treatment.
The dataset is from Riaz et al "Tumor and Microenvironment Evolution
during Immunotherapy with Nivolumab" *Cell* (2017)
The counts data were downloaded from GEO accession GSE91061:
The output of the Rmd file can be viewed on GitHub here: