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https://github.com/mjlajeunesse/juicr
The juicr R package is a GUI interface to automated, semi-automated, and manual tools for extracting data from scientific images -- like scatter or bar plots that contain data, or other images with information that can be converted numerically or coordinates classified.
https://github.com/mjlajeunesse/juicr
Last synced: 3 months ago
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The juicr R package is a GUI interface to automated, semi-automated, and manual tools for extracting data from scientific images -- like scatter or bar plots that contain data, or other images with information that can be converted numerically or coordinates classified.
- Host: GitHub
- URL: https://github.com/mjlajeunesse/juicr
- Owner: mjlajeunesse
- Created: 2021-05-05T12:56:41.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2021-09-08T16:11:08.000Z (about 3 years ago)
- Last Synced: 2024-05-19T23:37:15.778Z (6 months ago)
- Language: R
- Size: 557 KB
- Stars: 61
- Watchers: 2
- Forks: 3
- Open Issues: 3
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Metadata Files:
- Readme: README.md
Awesome Lists containing this project
- jimsghstars - mjlajeunesse/juicr - The juicr R package is a GUI interface to automated, semi-automated, and manual tools for extracting data from scientific images -- like scatter or bar plots that contain data, or other images with in (R)
README
## juicr package for R 
### purpose of the juicr package
**juicr** is a GUI interface to automated, semi-automated, and manual tools for extracting data from scientific images -- like scatter or bar plots that contain data, or other images with information that can be converted numerically or coordinates classified. More information about **juicr** can be found at [http://lajeunesse.myweb.usf.edu](http://lajeunesse.myweb.usf.edu).
## layout & vignette (click on image)
### video tutorial
A brief use and installation tutorial for **juicr** can be watched on *Youtube* here:
### installation instructions and dependencies
**juicr** has an external dependency that needs to be installed and loaded prior to use in R. This is the **EBImage** R package (Pau et al. 2010) available only from the Bioconductor repository: https://www.bioconductor.org.
To properly install **juicr**, start with the following R script that loads the Bioconductor resources needed to install the **EBImage** (also accept all dependencies):
``` r
install.packages("BiocManager");
BiocManager::install("EBImage")
library(metagear)
```
This dependency sometimes results in CRAN failing to generate a binary of **juicr** for your OS -- which sadly happens often. In this case install from the source, for example:
``` r
install.packages("juicr_0.1.tar.gz", repos = "http://cran.us.r-project.org", type = "source", dependencies = TRUE)
library(juicr)
```
### How to cite?
Lajeunesse, M.J. (2021) Automated, semi-automated, and manual extraction of numerical data from scientific images, plot, charts, and figures. R package version 0.1. https://CRAN.R-project.org/package=juicr
### Found a bug?
Please email me at [email protected] with the subject header: "juicr bug" and in the body please include juicr's version, your OS, and a short description of the issue. I will try to include fixes in following releases.