https://github.com/mmabrouk/protein_contacts_extractor

A simple script that extract (medium and long-range) contacts from the native structure of proteins
https://github.com/mmabrouk/protein_contacts_extractor

Last synced: 2 days ago
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A simple script that extract (medium and long-range) contacts from the native structure of proteins

• Host: GitHub
• URL: https://github.com/mmabrouk/protein_contacts_extractor
• Owner: mmabrouk
• Created: 2013-06-17T10:18:32.000Z (over 11 years ago)
• Default Branch: master
• Last Pushed: 2013-06-17T10:25:24.000Z (over 11 years ago)
• Last Synced: 2023-08-01T05:20:05.245Z (about 1 year ago)
• Language: Python
• Size: 109 KB
• Stars: 3
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
protein_contacts_extractor

==========================

A simple script that extract (medium and long-range) contacts from the native structure of proteins.

Usage:

python extractNativeContacts.py -p 12asA.pdb [-c medium -t 5]

>Extracts [medium-range] contacts from 12asA.pdb with a threshold of 5A defined for contact.

The extracted contacts will be printed to the console.