https://github.com/mmasoud1/ome-channels-organizer

Create OME channel groups .
https://github.com/mmasoud1/ome-channels-organizer

Last synced: about 2 months ago
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Create OME channel groups .

• Host: GitHub
• URL: https://github.com/mmasoud1/ome-channels-organizer
• Owner: Mmasoud1
• Created: 2020-06-19T21:48:53.000Z (over 4 years ago)
• Default Branch: master
• Last Pushed: 2020-11-06T02:36:39.000Z (about 4 years ago)
• Last Synced: 2024-02-04T05:24:47.310Z (11 months ago)
• Language: Jupyter Notebook
• Size: 60.8 MB
• Stars: 1
• Watchers: 3
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# OME-Channels Organizer

Copyright 2020 Mohamed Masoud

An interactive tool to manage, manipulate, store the multi-channels OME-Tiff files .

For citation please mention the link:

`https://github.com/Mmasoud1/OME-Channels-Organizer`

The tool is using Digital Slide Archive as a backbone to update the image metadata remotely or locally.

To run locally, just start up a simple local server from the root level of the repository.

For the online version, you need to create your account on any DSA servers and upload your OME file and basic omeDescription metadata as in this link:

`https://styx.neurology.emory.edu/girder/#item/5e361da534679044bda81b16`

For creating OME channel groups, browse to your server file and click design mode with the tool as in show me section below.

## License.

[CC BY-NC-ND](https://creativecommons.org/licenses/by-nc-nd/3.0/) license

## Show Me

![App Interface](https://github.com/Mmasoud1/OME-Channels-Organizer/blob/master/ShowMe/OMEDemo.gif)