https://github.com/mmkim1210/1kg
🗺️Download and process 1000 Genomes genotype for ancestry-specific LD reference panel
https://github.com/mmkim1210/1kg
genotype linkage multi-ethnic
Last synced: about 1 month ago
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🗺️Download and process 1000 Genomes genotype for ancestry-specific LD reference panel
- Host: GitHub
- URL: https://github.com/mmkim1210/1kg
- Owner: mmkim1210
- Created: 2022-09-15T23:51:29.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2023-01-07T04:59:58.000Z (over 2 years ago)
- Last Synced: 2025-04-10T04:14:44.410Z (about 1 month ago)
- Topics: genotype, linkage, multi-ethnic
- Language: Shell
- Homepage:
- Size: 104 KB
- Stars: 0
- Watchers: 1
- Forks: 1
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# 1000 Genomes Project data by ancestry groups
This directory stores scripts that prepare [__1000 Genomes__](https://www.internationalgenome.org/) genotype array data by ancestry groups, which then can be used to visualize linkage disequilibrium (LD) in [__GeneticsMakie.jl__](https://github.com/mmkim1210/GeneticsMakie.jl). To get started, run scripts in `src` in order. The output will consist of genotype data for `EUR`, `EAS`, `AMR`, `SAS`, and `AFR` groups.