https://github.com/mmkim1210/gene-list
đź“šList of neuropsychiatric risk genes
https://github.com/mmkim1210/gene-list
Last synced: about 1 month ago
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đź“šList of neuropsychiatric risk genes
- Host: GitHub
- URL: https://github.com/mmkim1210/gene-list
- Owner: mmkim1210
- Created: 2021-02-04T23:24:44.000Z (over 4 years ago)
- Default Branch: main
- Last Pushed: 2022-03-20T23:06:45.000Z (about 3 years ago)
- Last Synced: 2025-04-06T10:52:45.642Z (about 1 month ago)
- Homepage:
- Size: 32.5 MB
- Stars: 0
- Watchers: 1
- Forks: 1
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
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README
# gene-list
The following is a work-in-progress that contains a list of genes implicated in a range of neurodevelopmental and neuropsychiatric disorders. This list was generated from various human genetics study designs—for example, GWAS surveying common variants and whole-exome sequencing (WES) studies surveying rare variants.
|List|Count|Download|
|:--|--:|:--|
|[ASD syndromic](./list/SFARI-Gene_genes_01-13-2021release_02-05-2021export.csv)|328|[SFARI](https://gene.sfari.org/)|
|[ASD de novo](./list/mmc7.xlsx)|65|[Sanders et al. 2015](https://doi.org/10.1016/j.neuron.2015.09.016)|
|[ASD de novo](./list/Satterstrom.xlsx)|102|[Satterstrom et al. 2020](https://doi.org/10.1016/j.cell.2019.12.036)|
|[ASD rare inehrited](./list/mmc3.xlsx)|69|[Ruzzo et al. 2019](https://doi.org/10.1016/j.cell.2019.07.015)|
|[DD de novo](./list/41586_2020_2832_MOESM4_ESM.xlsx)|285|[Kaplanis et al. 2020](https://doi.org/10.1038/s41586-020-2832-5)|
|[SCZ rare](./list/meta_results_2021_02_04_20_01_48.csv)|10|[SCHEMA](https://schema.broadinstitute.org/results)|
|[SCZ GWAS PsychENCODE](./list/INT-17_SCZ_High_Confidence_Gene_List.csv)|321|[Wang et al. 2018](http://resource.psychencode.org/)|
|[SCZ GWAS Hi-C](./list/1-s2.0-S0920996419300891-mmc1.txt)|455|[Mah et al. 2018](https://doi.org/10.1016/j.schres.2019.03.007)|
|[ASD/ID/DD de novo](./list/41588_2018_288_MOESM3_ESM.xlsx)|253|[Coe et al. 2018](https://doi.org/10.1038/s41588-018-0288-4)|
|[FMRP binding RNA](./list/mmc2.xls)|842|[Darnell et al. 2011](https://doi.org/10.1016/j.cell.2011.06.013)|
|[CELF4 binding RNA](./list/mmc2.xls)|2,803|[Wagnon et al. 2012](https://doi.org/10.1371/journal.pgen.1003067)|
|[RBFOX1 binding RNA](./list/pgen.1003067.s004.xlsx)|2,049|[Weyn-Vanhentenryck et al. 2014](https://doi.org/10.1016/j.celrep.2014.02.005)|
|[Cancer genes](./list/Census_all.tsv)|576|[COSMIC](https://cancer.sanger.ac.uk/census)|
|[General disease genes](./list/gencc-submissions.tsv)|2,754|[GenCC](https://search.thegencc.org/)|
|[Housekeeping genes](./list/HK_genes.txt)|3,804|[Eisenberg et al. 2013](https://www.tau.ac.il/~elieis/HKG/)|
|[MDEM](./list/MDEM.txt)|70|[Fahrner et al. 2019](https://doi.org/10.1093/hmg/ddz174)|
|[Disease genes from UKBB WES](./list/41586_2021_4103_MOESM5_ESM.xlsx)|564|[Backman et al. 2021](https://www.nature.com/articles/s41586-021-04103-z)|