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https://github.com/mmkim1210/geneticsmakieexamples
👨💻Reproducible GeneticsMakie.jl examples
https://github.com/mmkim1210/geneticsmakieexamples
Last synced: about 2 months ago
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👨💻Reproducible GeneticsMakie.jl examples
- Host: GitHub
- URL: https://github.com/mmkim1210/geneticsmakieexamples
- Owner: mmkim1210
- Created: 2022-01-14T08:29:34.000Z (almost 3 years ago)
- Default Branch: master
- Last Pushed: 2024-04-02T15:58:38.000Z (9 months ago)
- Last Synced: 2024-04-02T17:01:34.925Z (9 months ago)
- Language: Julia
- Homepage: https://github.com/mmkim1210/GeneticsMakie.jl
- Size: 85.1 MB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# GeneticsMakieExamples
An example Julia code for generating LocusZoom plots.
Open Julia v1.6 + within the folder and type
```julia
julia> ]
pkg> activate .
pkg> instantiate
```
Then run `src/GeneticsMakieExamples.jl` in Julia REPL by
```julia
julia> include("./src/GeneticsMakieExamples.jl")
```
Or you can run it instead in terminal via
```
julia --project=. ./src/GeneticsMakieExamples.jl
```
Recommend having at least 16 GB RAM available for this code.
## Required data
data
├── adhd.chr15.txt.gz # adhd GWAS sumstats
├── alz.chr15.txt.gz # alz GWAS sumstats
├── asd.chr15.txt.gz # asd GWAS sumstats
├── bd.chr15.txt.gz # bd GWAS sumstats
├── height.chr15.txt.gz # height GWAS sumstats
├── menopause.chr15.txt.gz # menopause GWAS sumstats
├── neuroticism.chr15.txt.gz # neuroticism GWAS sumstats
├── scz.chr15.txt.gz # scz GWAS sumstats
├── weight.chr15.txt.gz # weight GWAS sumstats
├── gencode.v39lift37.annotation.chr15.gtf.gz # GENCODE v39
└── kgp.chr15.{bed, bim, fam} # 1000 Genomes EUR reference
## Final output
