https://github.com/mmore500/gen3sis-script
https://github.com/mmore500/gen3sis-script
Last synced: 3 months ago
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- Host: GitHub
- URL: https://github.com/mmore500/gen3sis-script
- Owner: mmore500
- Created: 2023-12-01T21:56:56.000Z (over 1 year ago)
- Default Branch: master
- Last Pushed: 2023-12-14T20:46:34.000Z (over 1 year ago)
- Last Synced: 2023-12-14T21:40:13.590Z (over 1 year ago)
- Language: R
- Size: 26.4 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# gen3sis-script
enter docker container `sudo docker run -it -v "$(pwd)":/pwd -w /pwd mmore500/gen3sis bash`
clone script files `git clone https://github.com/mmore500/gen3sis-script` if not already present
update script files `git -C gen3sis-script pull origin master`
run
- entire workflow `Rscript gen3sis-script/run_workflow.R`
- just create config `Rscript gen3sis-script/create_config.R`
- just create landscape `Rscript gen3sis-script/create_landscape.R`
- just run simulation `Rscript gen3sis-script/run_simulation.R`
data should appear in `/pwd/data/config`
to run a Python script `python3 gen3sis-script/script.py`
to run a R script `Rscript gen3sis-script/script.R`
return to working directory `cd /pwd`
for storing data files