https://github.com/mmore500/wse-sketches
Development work for agent-based evolution/epidemiological modeling on the Cerebras Wafer-scale Engine (WSE) hardware
https://github.com/mmore500/wse-sketches
Last synced: 3 months ago
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Development work for agent-based evolution/epidemiological modeling on the Cerebras Wafer-scale Engine (WSE) hardware
- Host: GitHub
- URL: https://github.com/mmore500/wse-sketches
- Owner: mmore500
- License: mit
- Created: 2023-06-06T14:43:09.000Z (almost 2 years ago)
- Default Branch: master
- Last Pushed: 2024-10-23T16:01:34.000Z (7 months ago)
- Last Synced: 2024-10-26T08:56:11.587Z (7 months ago)
- Language: Shell
- Homepage:
- Size: 628 MB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- License: LICENSE
- Citation: CITATION.cff
Awesome Lists containing this project
README
# wse-sketches
[](https://github.com/mmore500/wse-sketches/actions/workflows/ci.yaml)
[](https://github.com/mmore500/wse-sketches)
[](https://zenodo.org/doi/10.5281/zenodo.10779280)
Development work for agent-based evolution/epidemiological modeling on the Cerebras Wafer-scale Engine (WSE) hardware.
Incoprorates [hereditary stratigraphy](https://github.com/mmore500/hstrat) methodology for distributed tracking of agent phylogenies.
Requires [Cerebras SDK](https://www.cerebras.net/developers/sdk-request/), available through invitation.
## Contents
- `ziglib`: port of [`hsurf` algorithms](https://github.com/mmore500/hstrat-surface-concept/) from Python to Zig
- `cerebraslib`: port of `hsurf` algorithms to Cerebras Software Language (CSL) as well other supporting materials for WSE kernels
- `kernel-test-cerebraslib`: uses Cerebras WSE hardware simulator to run unit tests on `cerebraslib` components
- `kernel-async-ga`: general purpose framework for decentralized, island-model genetic algorithm across WSE Processing Elements (PEs), with configurably-sized agent genomes, customizable mutation operator, and customizable fitness function; includes scripts to run on Cerebras WSE hardware simulator
- `kernel-self-driving` and `kernel-simple-ga`: early exploration of WSE capabilities and design patterns
- `pylib`: Python support code for data analysis
- `binder`: data analysis notebooks (empty; ran in CI and synced to `binder` branch)
- `tex`: manuscript source materials
## Installation and Running
See our [Continuous Integration config](https://github.com/mmore500/wse-sketches-mirror/blob/master/.github/workflows/ci.yaml) for detailed instructions on installing dependencies and running project components.
Note that the `test-csl` continuous integration components do not run within the scope of the public-facing `wse-sketches` repository in order to protect Cerebras' intellectual property.
## Citing
If wse-sketches contributes to a scientific publication, please cite it as
> Matthew Andres Moreno and Connor Yang. (2024). mmore500/wse-sketches. Zenodo. https://doi.org/10.5281/zenodo.10779280
```bibtex
@software{moreno2024wse,
author = {Matthew Andres Moreno and Connor Yang},
title = {mmore500/wse-sketches},
month = mar,
year = 2024,
publisher = {Zenodo},
doi = {10.5281/zenodo.10779280},
url = {https://doi.org/10.5281/zenodo.10779280}
}
```
Consider also citing [hsurf](https://github.com/mmore500/hstrat-surface-concept/blob/master/README.md#citing) and [hstrat](https://hstrat.readthedocs.io/en/stable/citing.html).
And don't forget to leave a [star on GitHub](https://github.com/mmore500/pecking/stargazers)!
## Contact
Matthew Andres Moreno