https://github.com/mojaie/flashflood-workspace
A Flashflood data analysis environment
https://github.com/mojaie/flashflood-workspace
Last synced: 8 months ago
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A Flashflood data analysis environment
- Host: GitHub
- URL: https://github.com/mojaie/flashflood-workspace
- Owner: mojaie
- License: mit
- Created: 2017-11-18T14:33:12.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2020-11-21T03:26:55.000Z (over 5 years ago)
- Last Synced: 2025-03-13T10:33:39.351Z (over 1 year ago)
- Language: Python
- Homepage:
- Size: 2.92 MB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
Flashflood workspace sample
=============================
This repository provides sample setting of Flashflood environment.
Constructing workspace
------------------------
1. Prepare Python environment and install Flashflood
see [Flashflood installation](https://github.com/mojaie/flashflood#installation)
1. Clone this sample repository
```
git clone https://github.com/mojaie/flashflood-workspace.git your-home-dir
```
1. Install Kiwiii (web application for data visualization) by using npm
```
cd your-home-dir
npm install kiwiii
```
Or npm link for the client module development.
```
cd your-home-dir
npm link ../kiwiii
```
1. Server configuration
Open server_config.yaml and edit.
If you want to activate contrib modules, add the parameter below.
```
externals:
- name: "Screener API"
module: "contrib.screenerapi"
- name: "PubChem"
module: "contrib.pubchem"
```
1. Run workflow scripts to build sample databases
```
make chem
make assay
```
1. Run server
```
make serve
```
License
--------------
[MIT license](http://opensource.org/licenses/MIT)
Test datasets provided by [DrugBank](https://www.drugbank.ca/) are permitted to use under [Creative Common’s by-nc 4.0 License](https://creativecommons.org/licenses/by-nc/4.0/legalcode)
Copyright
--------------
(C) 2014-2017 Seiji Matsuoka