https://github.com/mollybeach/chromagene

Molly Beach Capstone React art with dna txt files react node js
https://github.com/mollybeach/chromagene

art dna-sequences heroku nodejs react reactjs scss

Last synced: about 1 month ago
JSON representation

Molly Beach Capstone React art with dna txt files react node js

• Host: GitHub
• URL: https://github.com/mollybeach/chromagene
• Owner: mollybeach
• License: mit
• Created: 2021-03-24T20:26:07.000Z (almost 4 years ago)
• Default Branch: master
• Last Pushed: 2021-08-12T04:11:02.000Z (over 3 years ago)
• Last Synced: 2023-03-10T19:36:26.343Z (almost 2 years ago)
• Topics: art, dna-sequences, heroku, nodejs, react, reactjs, scss
• Language: SCSS
• Homepage:
• Size: 164 MB
• Stars: 4
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        

![GitHub Logo](client/src/assets/Icons/company.svg)

# Getting Started with ChromoGene App

https://chromagene.herokuapp.com/

![GitHub Logo](client/src/assets/images/chogif.GIF)

![GitHub Logo](client/src/assets/images/chromosome2.png)

![GitHub Logo](client/src/assets/images/snpp.png)

npm install heroku

git clone https://github.com/mollybeach/chromagene.git

cd chromagene/

heroku login

heroku create

git push heroku master

npm install

cd client

npm install

cd ..

npm run build

npm install -g serve

serve -s build

CTRL+C

npm start

git add .

git commit -m "Migrate from chromagene-buildpack to Node server"

git push heroku master

heroku buildpacks:clear

Upload raw dna text file to chromagene.heroku.app/upload

DNA Files are enormous around 600,000 lines 

Example DNA the first of every chromosome displayed: 

![GitHub Logo](client/src/assets/images/extxt.png)

![GitHub Logo](client/src/assets/images/start.png)

#AncestryDNA 

rs369202065	1	569388	0	0

rs6712483	2	27572	C	C

rs13060385	3	61495	A	G

rs2859184	4	37120	0	0

rs13355169	5	21529	0	0

rs200202093	6	150279	0	0

rs7456436	7	44935	C	C

rs11780869	8	164984	G	G

rs10814410	9	46587	C	C

rs10904494	10	113934	0	0

rs3741411	11	199256	A	G

rs11063263	12	191619	A	G

rs4415875	13	19022393	0	0

rs28699618	14	19327823	T	T

rs12899110	15	20028058	A	C

rs8466	16	97354	0	0

rs6565704	17	13546	C	C

rs2003867	18	46431	0	0

rs56025600	19	249357	C	C

rs1418258	20	63799	C	C

rs117389256	21	10963178	G	G

rs145711952	22	16199921	0	0

rs5939319	23	2700157	0	0

In Ancestry.txt Starting Chromosome Lines: 

Chromosome1~line 01

Chromosome2~line 50620

Chromosome3~line 103081

Chromosome4~ line 144150

Chromosome 5 ~line 218300

Chromosome 6 ~line 668771

Chromosome 7 ~line 259284

Chromosome 8 ~line 294303

Chromosome 9 ~line 325772

Chromosome 10 ~line 355287

Chromosome 11 ~line 199256

Chromosome 12 ~line 420210

Chromosome 13~line  50639

Chromosome 14 ~line  476482

Chromosome 15 ~line  497420

Chromosome 16 ~line 518065

Chromosome 17 ~line 5419333

Chromosome 18 ~line 565286

Chromosome 19 ~line 584088

Chromosome 20~line 600388

Chromosome 21 ~line 617455

Chromosome 22~line  6217182

Chromosome 23 ~line 637461