https://github.com/monarch-initiative/ontorunner

https://github.com/monarch-initiative/ontorunner

concept-recognition monarchinitiative nlp obofoundry

Last synced: 2 months ago
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• Host: GitHub
• URL: https://github.com/monarch-initiative/ontorunner
• Owner: monarch-initiative
• License: cc0-1.0
• Created: 2020-05-13T18:15:46.000Z (almost 5 years ago)
• Default Branch: master
• Last Pushed: 2023-02-23T19:48:35.000Z (about 2 years ago)
• Last Synced: 2024-11-14T21:12:16.657Z (5 months ago)
• Topics: concept-recognition, monarchinitiative, nlp, obofoundry
• Language: Jupyter Notebook
• Homepage: https://monarch-initiative.github.io/ontorunner/index.html
• Size: 9.86 MB
• Stars: 11
• Watchers: 3
• Forks: 2
• Open Issues: 10
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# ontoRunNER

This is a wrapper project around the following named entity recognition (NER) tools:

 - [OGER](https://github.com/OntoGene/OGER).

 - [spaCy](https://spacy.io)

   - using [sciSpaCy](https://scispacy.apps.allenai.org) pipeline 

   namely the CRAFT corpus (`en_ner_craft_md`) used by default. Others can be used as listed [here](https://github.com/allenai/scispacy#available-models)

## Documentation

[ontoRunNER using Sphinx](https://monarch-initiative.github.io/ontorunner/index.html)