https://github.com/mooreryan/taxi
✨ Sparkling tools for dealing with the NCBI Taxonomy ✨
https://github.com/mooreryan/taxi
Last synced: 6 months ago
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✨ Sparkling tools for dealing with the NCBI Taxonomy ✨
- Host: GitHub
- URL: https://github.com/mooreryan/taxi
- Owner: mooreryan
- License: apache-2.0
- Created: 2024-11-30T20:38:06.000Z (over 1 year ago)
- Default Branch: main
- Last Pushed: 2025-12-17T04:51:02.000Z (7 months ago)
- Last Synced: 2025-12-20T18:28:27.193Z (7 months ago)
- Language: OCaml
- Size: 159 KB
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- License: LICENSE-APACHE.txt
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README
# Taxi
✨ Sparkling tools for dealing with the NCBI Taxonomy ✨
## Installation
Download one of the precompiled executable files from the release page. There are Linux (x86), and MacOS (x86 and arm) options.
If you are an OCaml programmer, or have a working OCaml environment, feel free to build from source. Note however that the `main` branch may is not necessarily stable or in a working state. It is better to build from a tagged commit.
## Usage
For usage info, see the help page:
```
$ taxi --help
```
For more details, see the help pages for individual subcommands. E.g.,
```
$ taxi descendants --help
```
## Subcommands
- `descendants` -- get descendants of a set of taxonomy IDs
- `filter` -- filter rows based on patterns
- `sample` -- sample taxonomy IDs at a given taxonomic rank
## License
[](https://github.com/mooreryan/taxi)
Copyright (c) 2024 Ryan M. Moore
Licensed under the Apache License, Version 2.0 or the MIT license, at your option. This program may not be copied, modified, or distributed except according to those terms.