https://github.com/mrc-ide/hiv-orderly-web

Orderly web configuration for hiv-orderly
https://github.com/mrc-ide/hiv-orderly-web

Last synced: 25 days ago
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Orderly web configuration for hiv-orderly

• Host: GitHub
• URL: https://github.com/mrc-ide/hiv-orderly-web
• Owner: mrc-ide
• Created: 2021-06-15T13:13:45.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2023-09-08T11:10:44.000Z (over 1 year ago)
• Last Synced: 2024-11-06T02:31:42.735Z (2 months ago)
• Language: Shell
• Size: 32.2 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
## hiv-orderly OrderlyWeb configuration

For additional orderly documentation specific to the HIV deployment please see [the wiki](https://github.com/mrc-ide/hiv-docs/wiki/Orderly) this contains information about sharepoint, and OW including how to update a package on the OW server.

### Prerequisites

First, install the deploy tool

```

pip3 install --user orderly-web

```

Ensure that the path that the script is copied into is in your path (on Linux, most likely `~/.local/bin`, on OSX `~/Library/Python//bin`

### Start

```

./start (all | ..)

```

To start all instances

```

./start all

```

To start a specific instance

```

./start naomi

```

Notes

* The name needs to match the dir name in this repo, so for inference data it is `inference_data`

* The `naomi` instance starts the proxy which proxies all other instances at `hiv-orderly.dide.ic.ac.uk/`. When other instances are brought up we connect them to the proxy, because of this if you restart the `naomi` instance you must restart all other instances so they can connect to the new proxy.

### Stop

```

./stop (all | ...)

```

### Upgrading

```

./stop (all | ..)

./start (all | ..)

```

Note that if you restart the `naomi` instance all other instances need to be restarted so they can be added to the proxy configuration.

### Install a package

```

./orderly_install  'command'

```

e.g.

```

./orderly_install fertility "install.packages(\"dplyr\")"

```

### Start an R session in the orderly container

```

./orderly_r 

```

You can use this to then run things like `orderly_pull_dependencies` or `orderly_pull_archive`