https://github.com/mrc-ide/icl-hbv

The HBV model developed at Imperial College London
https://github.com/mrc-ide/icl-hbv

Last synced: 12 days ago
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The HBV model developed at Imperial College London

• Host: GitHub
• URL: https://github.com/mrc-ide/icl-hbv
• Owner: mrc-ide
• Created: 2022-01-20T17:02:35.000Z (almost 3 years ago)
• Default Branch: main
• Last Pushed: 2024-03-15T13:07:18.000Z (10 months ago)
• Last Synced: 2024-11-06T02:32:36.647Z (2 months ago)
• Language: MATLAB
• Size: 13.5 MB
• Stars: 2
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# icl-hbv

The HBV model developed at Imperial College London, as described in the paper ["The impact of the timely birth dose vaccine on the global elimination of hepatitis B"](https://www.nature.com/articles/s41467-021-26475-6).

All of the scripts were run in MATLAB (version R2020b).

In the folder `src`, the folder `analysis` contains the scripts to run.

`main_script.m` runs `country_level_analyses.m`, which in turn runs `HBVmodel.m` (the latter is in the folder `model`), to generate 800 results files containing results for each country.

`summarize_stochastic_runs.m` summarizes the results from the 800 results files into results for each country, each WHO region, as well as global results.

`draw_figures.m` draws Figures 1e–1f, 2a–2d, 3a, 3b, 4a–4b, 5a–5b, Supplementary figures 1, 2a–2b and 3 and Supplementary Tables 3 and 4 (default analyses). Data structures for running this code can be downloaded from the Dropbox folder  and put into the folder `outputs`.

The folder `data_and_script_for_figures` contains the script `draw_figs.m` for drawing Figures 1f, 2b, 3a, 3b, 4a–4b, 5a–5b, Supplementary Figures 1, 2b and 3 and Supplementary Tables 3 and 4 (default analyses). The data structure for running this code can be downloaded from the Dropbox folder  and put into the folder `data_and_script_for_figures`.