https://github.com/mrc-ide/inference-data

https://github.com/mrc-ide/inference-data

Last synced: 25 days ago
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• Host: GitHub
• URL: https://github.com/mrc-ide/inference-data
• Owner: mrc-ide
• Created: 2022-07-13T15:09:55.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2023-12-01T12:07:38.000Z (about 1 year ago)
• Last Synced: 2024-11-06T02:31:33.672Z (2 months ago)
• Language: R
• Size: 4.2 MB
• Stars: 0
• Watchers: 4
• Forks: 0
• Open Issues: 2
• Metadata Files:
  • Readme: README.md

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README

        
# Data repository for the HIV Inference Group

This is an orderly repository that holds master datasets for:

* Boundary files

* Populations

* Survey data

* Spectrum files

* Naomi fits

The master branch is associated with an Estimates year, using the orderly task parameter `version`, and all tasks will be updated only once a year.

**Ensure that all downstream tasks using master dataset tasks use a version parameter to avoid crossing datasets between different years**

The current up-to-date version to pull is: 2022.

## Using the orderly web remote

See https://www.vaccineimpact.org/orderly/articles/remote.html#interacting-with-the-remote-server

## Setting up environment variables

Several paths to the IC Sharepoint are private and require environment variables to be set. Message Oli for these.