https://github.com/mrc-ide/plasmosim

A basic Plasmodium simulator. Contains functions to simulate epidemiological and genetic data from a simple model of Plasmodium falciparum transmission.
https://github.com/mrc-ide/plasmosim

Last synced: 25 days ago
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A basic Plasmodium simulator. Contains functions to simulate epidemiological and genetic data from a simple model of Plasmodium falciparum transmission.

• Host: GitHub
• URL: https://github.com/mrc-ide/plasmosim
• Owner: mrc-ide
• License: mit
• Created: 2021-08-18T15:01:30.000Z (over 3 years ago)
• Default Branch: master
• Last Pushed: 2023-12-12T20:20:38.000Z (about 1 year ago)
• Last Synced: 2024-11-06T02:31:31.902Z (2 months ago)
• Language: C++
• Size: 4.51 MB
• Stars: 1
• Watchers: 4
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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# PlasmoSim

PlasmoSim is an R package for simulating both epidemiological and genetic data from a simple model of *Plasmodium falciparum* transmission. The model itself is fairly lightweight, which speeds up computation times and in turn allows us to model multiple demes (partially isolated sub-populations) connected by migration. This allows us to explore interesting spatial questions relating to patterns of *P. falciparum* genetic structure.

All documentation, including installation instructions and tutorials, are on the [PlasmoSim website](https://mrc-ide.github.io/PlasmoSim/).

# Version History

The current version of the software is v1.0.0, released 12 Dec 2023.