https://github.com/mrc-ide/safir2

squire and friends individual rewrite rewrite
https://github.com/mrc-ide/safir2

Last synced: 25 days ago
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squire and friends individual rewrite rewrite

• Host: GitHub
• URL: https://github.com/mrc-ide/safir2
• Owner: mrc-ide
• License: other
• Created: 2021-12-19T05:42:05.000Z (about 3 years ago)
• Default Branch: main
• Last Pushed: 2022-01-12T01:51:41.000Z (about 3 years ago)
• Last Synced: 2024-11-06T02:32:17.077Z (2 months ago)
• Language: R
• Homepage: https://mrc-ide.github.io/safir2/
• Size: 460 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# safir2

[![R-CMD-check](https://github.com/mrc-ide/safir2/workflows/R-CMD-check/badge.svg)](https://github.com/mrc-ide/safir2/actions)

[![Codecov test coverage](https://codecov.io/gh/mrc-ide/safir2/branch/main/graph/badge.svg)](https://codecov.io/gh/mrc-ide/safir2?branch=main)

__safir2__ is an upgraded and refactored version of [__safir__](https://github.com/mrc-ide/safir), which implements a stochastic individual

based model of SARS-CoV-2 transmission. The model takes into account individual level

immunity and neutralizing antibody titre, as well as allowing for complex vaccine

allocation schemes. It uses [__individual__](https://github.com/mrc-ide/individual)

to specify and run the simulation model.

## Installation

```r

remotes::install_github('mrc-ide/safir2')

library(safir2)

```

## License

MIT © Imperial College of Science, Technology and Medicine